spike_cram_counts {spiky} | R Documentation

## spike-in counts, as a long data.frame

### Description

A data.frame with spike-in results from CRAM files (generated from scan_spike_counts(CRAMs, spike=spike))

### Usage

    data(spike_cram_counts)

### Format

A data.frame object with

frag_grp

  the encoded spike contig name: basepairs_CpGs_GCpercent

id

  subject from whom cfMeDIP spike reads (column 3) were counted

read_count

  read coverage for this spike in this subject (column 2)

### Source

Generated from scan_spike_counts(CRAMs, spike=spike) using example CRAMs containing spike contigs

[Package spiky version 1.0.0 Index]