spike {spiky} | R Documentation

## spike-in contig properties for Sam's cfMeDIP spikes

### Description

A DataFrame with sequence, concentration, and other properties of Sam's synthetic cfMeDIP spike-in controls. The row names redudantly encode some of these properties, such as the number of CpGs in the spike-in sequence.

### Usage

    data(spike)

### Format

A DataFrame object with

sequence

  contig sequence, as a DNAStringSet

methylated

  are the CpGs in this spike-in methylated? 0 or 1

CpGs

  number of CpG dinucleotides in the spike, from 1 to 16

fmol

  femtomolar concentration of the spike-in for standard mix

molmass

  molar mass of spike-in sequence

### Source

https://doi.org/10.1101/2021.02.12.430289

[Package spiky version 1.0.0 Index]