ssb_res {spiky} | R Documentation

## scan_spiked_bam results from a merged cfMeDIP CRAM file (chr22 and spikes)

### Description

A CompressedGRangesList object with `genomic` (chr22) and `spikes` coverage, binned every 300bp for the genomic contigs then averaged across the bin, and summarized for each spike contig as (the default) `max` coverage. (In other words, the default output of scan_spiked_bam, restricted to a small enough set of genomic regions to be practical for examples.) This represents what most users will want to generate from their own merged BAMs or CRAMs, and is used repeatedly in downstream examples throughout the package.

### Usage

    data(ssb_res)

### Format

A CompressedGRangesList of coverage results, containing

genomic

  a GRanges with one metadata column, `coverage`

spikes

  a GRanges with one metadata column, `coverage`

### Source

Generated using scan_spiked_bam on an example bam containing chr22 and spike contigs.

[Package spiky version 1.0.0 Index]