splatPopParseVCF {splatter} | R Documentation

## Format and subset genotype data from a VCF file.

### Description

Extract numeric alleles from vcf object and filter out SNPs missing genotype data or outside the Minor Allele Frequency range in 'SplatPopParams'.

### Usage

    splatPopParseVCF(vcf, params)

### Arguments

`vcf` | VariantAnnotation object containing genotypes of samples.
`params` | SplatPopParams object containing parameters for population scale simulations. See `SplatPopParams` for details.

### Value

Genotype data.frame

[Package splatter version 1.18.2 Index]