kersplatSimAmbientCounts {splatter} | R Documentation

## Simulate Kersplat ambient counts

### Description

Simulate Kersplat ambient counts

### Usage

    kersplatSimAmbientCounts(sim, params, verbose)

### Arguments

`sim` | SingleCellExperiment containing simulation.
`params` | KersplatParams object with simulation parameters.
`verbose` | logical. Whether to print progress messages

### Details

The overall expression profile to calculated by averaging the cell counts of the (non-empty) cells. This is then multiplied by the ambient library sizes to get a mean for each cell. Counts are then sampled from a Poisson distribution using these means.

### Value

SingleCellExperiment with ambient counts

[Package splatter version 1.18.2 Index]