mockEmpiricalSet {splatter} | R Documentation

## Generate set of "empirical" mock data

### Description

Quick function to generate matching mock VCF, bulk expression, and eQTL data, useful for running splatPopEmpiricalMeans

### Usage

    mockEmpiricalSet(
      n.genes = 20,
      n.snps = 1000,
      n.samples = 10,
      chromosome = 1,
      chr.length = 2e+06,
      seed = NULL
    )

### Arguments

`n.genes` | Number of genes in mock eQTL data.
`n.snps` | Number of SNPs in mock vcf file.
`n.samples` | Number of samples in mock bulk data.
`chromosome` | Chromosome name
`chr.length` | Length of mock chromosome
`seed` | Optional: seed for random seed

### Value

list(gff=mockGFF, vcf=mockVCF, means=mockMEANS, eqtl=mockEQTL)

### Examples

    empirical <- mockEmpiricalSet()

[Package splatter version 1.18.2 Index]