parameters {srnadiff} | R Documentation

## Accessors for the 'parameters' slot of an srnadiffExp object

### Description

The `parameters` slot holds the parameter values used in an sRNA-diff approach as a named `list`. Default values exist for parameters, but these can also be supplied as input values in the `useParameters` argument of the `srnadiff` function or using the assignment function `parameters<-`.

### Usage

    ## S4 method for signature 'srnadiffExp'
    parameters(object)

    ## S4 replacement method for signature 'srnadiffExp'
    parameters(object) <- value

    ## S3 method for class 'srnadiff_par'
    print(x, ...)

### Arguments

`object` | An `srnadiffExp` object.
`value` | A named `list` containing valid parameters. See details.
`x` | The first element of the parameters used by an `srnadiff` object
`...` | The other elements of the parameters

### Value

The named list of the parameters used in the analysis.

### See Also

`useParameters` argument in `srnadiff` function.

### Examples

    srnaExp <- srnadiffExample()
    srnaExp <- srnadiff(srnaExp)
    print(parameters(srnaExp))

    parameters(srnaExp) <- list("minSize" = 1, "maxSize" = 1500)

    srnaExp <- srnadiffExample()
    srnaExp <- srnadiff(srnaExp)
    print(parameters(srnaExp))

[Package srnadiff version 1.14.0 Index]