tSNE_scatter {structToolbox} | R Documentation

## Feature boxplot

### Description

plots the new representation of data after applying tSNE.

### Usage

    tSNE_scatter(factor_name, ...)

### Arguments

`factor_name` | (character) The name of a sample-meta column to use.
`...` | Additional slots and values passed to `struct_class`.

### Details

This object makes use of functionality from the following packages:

- `Rtsne`

### Value

A `tSNE_scatter` object. This object has no `output` slots. See `chart_plot` in the `struct` package to plot this chart object.

### References

van der Maaten L, Hinton G (2008). “Visualizing High-Dimensional Data Using t-SNE.” Journal of Machine Learning Research, 9, 2579-2605.

van der Maaten L (2014). “Accelerating t-SNE using Tree-Based Algorithms.” Journal of Machine Learning Research, 15, 3221-3245.

Krijthe JH (2015). Rtsne: T-Distributed Stochastic Neighbor Embedding using Barnes-Hut Implementation. R package version 0.15, https://github.com/jkrijthe/Rtsne.

### Examples

    M = tSNE_scatter(factor_name='Species')

[Package structToolbox version 1.6.1 Index]