tmhmm_fix_path {surfaltr} | R Documentation

## Retrieve Data from TMHMM and Fix Functionality of TMHMM R Package

### Description

This function retrieves the raw data from tmhmm containing information about the membrane location of each amino acid in a transcript. In order to set a standard path that allows tmhmm to run, the path is set to match that of the fasta file contining the amino acids.

### Usage

    tmhmm_fix_path(fasta_filename, folder_name)

### Arguments

`fasta_filename` | Parameter containing input fasta file to be run on tmhmm
`folder_name` | Path to folder containing installed tmhmm software

### Value

Raw results from tmhmm containing membrane locations for each transcript

### Note

In order for this function to work, there needs to be a .fasta file containing the amino acid sequences for each transcript called "AA.fasta" saved to a folder called output within the working directory.

[Package surfaltr version 1.0.0 Index]