.scoreByTranscripts {svaRetro} | R Documentation

## Ranking matching transcripts

### Description

Ranking matching transcripts

### Usage

    .scoreByTranscripts(genes, transcripts.col)

### Arguments

`genes` | TxDb object of genes. hg19 and hg38 are supported in the current version.
`transcripts.col` | A vector of transcript names.

### Details

This is an internal function which returns overlapping transcript names with ranking scores. The ranking score is the proportion of exon-exon fusions (intronic deletion events) detected for a given transcript.

### Value

A dataframe with two columns, tx_name and score.

[Package svaRetro version 1.0.0 Index]