get_overlap_mask {synapsis} | R Documentation

## get_overlap_mask

### Description

creates mask for coincident foci

### Usage

    get_overlap_mask(
      strands,
      foci_label,
      watershed_stop,
      img_orig_foci,
      watershed_radius,
      watershed_tol
    )

### Arguments

`strands` | black white mask of strand channel
`foci_label` | black and white mask of foci channel
`watershed_stop` | Stop default watershed method with "on"
`img_orig_foci` | cropped foci channel
`watershed_radius` | Radius (ext variable) in watershed method used in foci channel. Defaults to 1 (small)
`watershed_tol` | Intensity tolerance for watershed method. Defaults to 0.05.

### Value

mask with coincident foci on strands

[Package synapsis version 1.0.0 Index]