returnRPKM {systemPipeR} | R Documentation

## RPKM Normalization

### Description

Converts read counts to RPKM normalized values.

### Usage

    returnRPKM(counts, ranges)

### Arguments

`counts` | Count data frame, e.g. from an RNA-Seq experiment.
`ranges` | `GRangesList` object, e.g. generated by `exonsBy(txdb, by="gene")`.

### Value

`data.frame`

### Author(s)

Thomas Girke

### Examples

    ## Not run:
    countDFrpkm <- apply(countDF, 2, function(x) returnRPKM(counts=x, gffsub=eByg))

    ## End(Not run)

[Package systemPipeR version 2.0.8 Index]