target {target} | R Documentation

## `target`: Predict Combined Function of Transcription Factors.

### Description

Implement the BETA algorithm for infering direct target genes from DNA-binding and perturbation expression data Wang et al. (2013) <doi: 10.1038/nprot.2013.150>. Extend the algorithm to predict the combined effect of two DNA-binding elements from comprable binding and expression data.

### Details

Predicting associated peaks and direct targets

`associated_peaks` `direct_targets`

Plotting and testing predictions `plot_predictions` `test_predictions`

Internal `target` functions: `merge_ranges` `find_distance` `score_peaks` `score_regions` `rank_product`

[Package target version 1.8.0 Index]