plotFit {ternarynet} | R Documentation

## Network Fit Plot

### Description

This function plots the graph corresponding to the minimum scoring network.

### Usage

     plotFit(ternaryFit, type="interactive", ...)

### Arguments

`ternaryFit` | a ternaryFit object
`type` | the type of plot to produce. "interactive" produces a plot that can be altered in the plotting window using the tkplot function from the igraph package. "static" produces a standard plot in any R graphics device.
`...` | additional parameters passed to the plotting function

### Value

A plot of the network corresponding to the minimum score (stored in the graphObjMin slot) is plotted.

### Author(s)

Matthew N. McCall and Anthony Almudevar

### See Also

Almudevar A, McCall MN, McMurray H, Land H (2011). Fitting Boolean Networks from Steady State Perturbation Data, Statistical Applications in Genetics and Molecular Biology, 10(1): Article 47.

### Examples

    ssObj <- matrix(c(1,1,1,0,1,1,0,0,1),nrow=3)
    pObj <- matrix(c(1,0,0,0,1,0,0,0,1),nrow=3)
    tnfitObj <- tnetfit(ssObj, pObj)
    plotFit(tnfitObj, type="static")

[Package ternarynet version 1.38.0 Index]