Package: tofsims
Type: Package
Title: Import, process and analysis of Time-of-Flight Secondary Ion
        Mass Spectrometry (ToF-SIMS) imaging data
Version: 1.22.0
Author: Lorenz Gerber, Viet Mai Hoang
Maintainer: Lorenz Gerber <genfys@gmail.com>
Depends: R (>= 3.3.0), methods, utils, ProtGenerics
Description: This packages offers a pipeline for import, processing and analysis of ToF-SIMS
          2D image data. Import of Iontof and Ulvac-Phi raw or preprocessed data is
          supported. For rawdata, mass calibration, peak picking and peak integration exist.
          General funcionality includes data binning, scaling, image subsetting and
          visualization. A range of multivariate tools common in the ToF-SIMS community are
          implemented (PCA, MCR, MAF, MNF). An interface to the bioconductor image processing
          package EBImage offers image segmentation functionality.
License: GPL-3
Imports: Rcpp (>= 0.11.2), ALS, alsace, signal, KernSmooth, graphics,
        grDevices, stats
Suggests: EBImage, knitr, rmarkdown, testthat, tofsimsData,
        BiocParallel, RColorBrewer
Enhances: parallel
LinkingTo: Rcpp, RcppArmadillo
VignetteBuilder: knitr
biocViews: ImmunoOncology, Infrastructure, DataImport,
        MassSpectrometry, ImagingMassSpectrometry, Proteomics,
        Metabolomics
RoxygenNote: 7.1.1
Encoding: UTF-8
NeedsCompilation: yes
URL: https://github.com/lorenzgerber/tofsims
BugReports: https://github.com/lorenzgerber/tofsims/issues
git_url: https://git.bioconductor.org/packages/tofsims
git_branch: RELEASE_3_14
git_last_commit: 6cfbd33
git_last_commit_date: 2021-10-26
Date/Publication: 2021-10-26
Packaged: 2021-10-27 04:27:44 UTC; biocbuild
Built: R 4.1.1; i386-w64-mingw32; 2021-10-27 13:51:29 UTC; windows
Archs: i386, x64
