taSNPLD {traseR} | R Documentation

## linkage disequilibrium (>0.8) within 100kb SNPs of all trait-associated SNPs from dbGaP and NHGRI

### Description

A GRange object `taSNPLD` contains linkage disequilibrium (>0.8) SNPs of all trait-associated SNPs from dbGaP and NHGRI.

### Usage

    data(taSNPLD)

### Value

The data frame `taSNPLD` contains four columns,

`SNP_ID` | SNP rs number
`seqnames` | Chromosome number associated with rs number
`ranges` | Chromosomal position, in base pairs, associated with rs number
`Trait` | Trait the SNP is associated with
`Trait Class` | Trait class which is formed based on the phenotype tree. Close traits are grouped together to form one class

### Author(s)

Li Chen <li.chen@emory.edu>, Zhaohui S.Qin<zhaohui.qin@emory.edu>

[Package traseR version 1.24.0 Index]