computeMsigNetwork {vissE} | R Documentation

## Compute a network using computed gene set overlap

### Description

Computes an igraph object using information on gene sets and gene sets computed using the `computeMsigOverlap()` function.

### Usage

    computeMsigNetwork(genesetOverlap, msigGsc)

### Arguments

`genesetOverlap` | a data.frame, containing results of an overlap analysis computed using the `computeMsigOverlap()` function.
`msigGsc` | a GeneSetCollection object, containing gene sets used to compute overlap.

### Value

an igraph object

### Examples

    data(hgsc)
    ovlap <- computeMsigOverlap(hgsc)
    ig <- computeMsigNetwork(ovlap, hgsc)

[Package vissE version 1.2.2 Index]