LinearMResult-class {Category}R Documentation

Class "LinearMResult"

Description

This class represents the results of a test for systematic change in some gene-level statistic by gene sets. The linearMTest generic function returns an instance of the LinearMResult class.

Objects from the Class

Objects can be created by calls of the form new("LinearMResult", ...), but is more commonly created using a call to linearMTest.

Slots

pvalues:
Object of class "numeric" ~~
effectSize:
Object of class "numeric" ~~
catToGeneId:
Object of class "list" ~~
annotation:
Object of class "character" ~~
geneIds:
Object of class "ANY" ~~
testName:
Object of class "character" ~~
pvalueCutoff:
Object of class "numeric" ~~
minSize:
Object of class "integer" ~~
testDirection:
Object of class "character" ~~

Extends

Class "LinearMResultBase", directly.

Methods

effectSize
signature(r = "LinearMResult"): ...
geneIdUniverse
signature(r = "LinearMResult"): ...
pvalues
signature(r = "LinearMResult"): ...

Author(s)

Deepayan Sarkar

See Also

linearMTest

Examples

showClass("LinearMResult")

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