smlSummary {GGBase}R Documentation

class and function to summarize frequency information on genotypes in an smlSet

Description

generates information on sample size, minor allele frequency, specific call frequencies, and HWE test results on all SNP in an smlSet

Usage

smlSummary(x)

Arguments

x instance of smlSet-class

Details

to control volume of printout a simple list extending class is defined for show method

Value

Instance of smlSummary class, which simply extends list. Each list element is a matrix of results provided by summary,snp.matrix-method.

Author(s)

VJCarey <stvjc@channing.harvard.edu>

Examples

library(GGtools)
if (!exists("hmceuB36.2021")) data(hmceuB36.2021)
smlSummary(hmceuB36.2021)

[Package GGBase version 3.4.0 Index]