summary,StabilityOverlap {GeneSelector}R Documentation

Summarize Overlap Scores

Description

Returns a five-point summary of overlap counts and scores, where the summary is done with respect to the different perturbed datasets.

Arguments

object An object of class StabilityOverlap
which
"scores"
Summary with respect to overlap score.
"overlap"
Summary with respect to the number of overlaps.
position Up to which position in the list (rank) overlap and score are computed. For instance, if position=100(default) then the summary is based on overlaps/scores on the lists of the top 100 genes.

Author(s)

Martin Slawski martin.slawski@campus.lmu.de
Anne-Laure Boulesteix http://www.slcmsr.net/boulesteix

References

Lottaz, C., Yang, X., Scheid, S., Spang, R. (2006)
OrderedList - a Bioconductor package for detecting similarity in ordered gene lists. Bioinformatics, 22, 2315-2316

See Also

StabilityOverlap


[Package GeneSelector version 1.4.0 Index]