getName-methods {KEGGgraph} | R Documentation |
Get 'name' attribute for given object, this method can be used for almost all objects implemented in KEGGgraph package to extract their name slot. See manual pages of individual objects for examples.
KEGGEdgeSubType-class
KEGGNode-class
KEGGPathway-class
KEGGPathwayInfo-class
KEGGReaction-class
Jitao David Zhang mailto:j.zhang@dkfz.de
KGML Document Manual http://www.genome.jp/kegg/docs/xml/
sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph") pathway <- parseKGML(sfile) ## get pathway name getName(pathway) ## get node name nodes <- nodes(pathway) getName(nodes[[2]]) ## get edge name: it is not informative since the nodes are identified ## with file-dependent indices edges <- edges(pathway) getName(edges[[7]]) ## get subtype name subtype <- getSubtype(edges[[2]])[[1]] getName(subtype)