getType-methods {KEGGgraph} | R Documentation |
This method can be used to extract generic type attribute from several objects implemented in KEGGgraph package.
The meanings and descriptions of the types can be found at KGML manual listed in the reference.
KEGGEdge-class
KEGGNode-class
KEGGReaction-class
Jitao David Zhang mailto:j.zhang@dkfz.de
KGML Manual http://www.genome.jp/kegg/docs/xml/
mapfile <- system.file("extdata/map00260.xml", package="KEGGgraph") maptest <- parseKGML(mapfile) ## node type node <- nodes(maptest)[[3]] getType(node) ## edge type edge <- edges(maptest)[[5]] getType(edge) ## reaction type reaction <- getReactions(maptest)[[5]] getType(reaction)