parseKGML2Graph {KEGGgraph}R Documentation

Parse KGML files into KEGG graph

Description

This function is a wrapper for parseKGML and KEGGpathway2Graph. It takes two actions: first it reads in the KGML file and parses it into an object of KEGGPathway-class, the second step it calls KEGGpathway2Graph function to return the graph model.

Usage

parseKGML2Graph(file, ...)

Arguments

file Name of KGML file
... other parameters passed to KEGGpathway2Graph, see KEGGpathway2Graph

Value

A graph object.

Author(s)

Jitao David Zhang mailto:j.zhang@dkfz.de

Examples

sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
gR <- parseKGML2Graph(sfile,expandGenes=TRUE)
gR

[Package KEGGgraph version 1.1.0 Index]