psimi25Interactor-class {RpsiXML}R Documentation

A class representing interactor from PSI-MI 2.5 XML files

Description

A class representing interactor from PSI-MI 2.5 XML files

Slots

sourceDb:
Object of class "character", source database
sourceId:
Object of class "character", ID of the source database
shortLabel:
Object of class "character", short label of the interactor, if not available the slot will be filled with "fullName" node of the file
uniprotId:
Object of class "character", UniProt ID of the interactor
organismName:
Object of class "character", the unique name of the organism name
taxId:
Object of class "character", the NCBI taxonomy ID

Methods

show
signature(x = "psimi25Interactor"): a print method
sourceDb
signature(x = "psimi25Interactor"): finds out source database
sourceId
signature(x = "psimi25Interactor"): returns ID of the source database
xref
sigature(x = "psimi25Interactor"): returns cross-references of the given interactor

Author(s)

Jitao David Zhang j.zhang@dkfz.de

See Also

parseInteractor

Examples

showClass("psimi25Interactor")

[Package RpsiXML version 1.4.1 Index]