complexName {RpsiXML}R Documentation

Accessor functions for complex

Description

These functions are used to extract useful information of complex in the form of psimi25Complex-class object.

Usage

complexName(x,...)
complexMembers(x,...)
complexAttributes(x,...)

Arguments

x An object of psimi25Complex-class
... Not implemented yet

Details

See examples

Value

complexName Returns the name of the complex in characters
complexMembers A data frame of protein members building the complex and their information
complexAttributes A named vector of character strings, the names are the attribute names while the values are attributes documented in the PSI-MI 2.5 file

Author(s)

Jitao David Zhang <j.zhang@dkfz.de>, Tony Chiang <tchiang@ebi.ac.uk>

See Also

psimi25Complex-class

Examples

xmlDir <- system.file("/extdata/psi25files",package="RpsiXML")

intactComplexxml <- file.path(xmlDir,"intact_complexSample.xml")
intactComplexSet <- parsePsimi25Complex(intactComplexxml, INTACT.PSIMI25)
complexSample <- complexes(intactComplexSet)[[2]]

complexName(complexSample)
complexAttributes(complexSample)
complexMembers(complexSample)

[Package RpsiXML version 1.4.1 Index]