report {ShortRead}R Documentation

Summarize quality assessment results into a report

Description

This generic function summarizes results from evaluation of qa into a report. Available report formats vary depending on the data analysed.

Usage

report(x, ..., dest=tempfile(), type="html")

Arguments

x An object returned by qa, usually derived from class .QA
... Additional arguments used by specific methods. See specific methods for details.
dest The output destination for the final report. For type="html" this is a directory; for (deprecated) type="pdf" this is a file.
type A text string defining the type of report; available report types depend on the type of object x; usually this is “html”.

Details

The following methods are defined:

Value

This function is invoked for its side effect; the return value is the name of the directory or file where the report was created.

Author(s)

Martin Morgan <mtmorgan@fhcrc.org>

See Also

SolexaExportQA

Examples

showMethods("report")

[Package ShortRead version 1.2.1 Index]