qa {ShortRead}R Documentation

Perform quality assessment on short reads

Description

This function is a common interface to quality assessment functions available in ShortRead. Results from this function may be displayed in brief, or integrated into reports using, e.g., report.

Usage

qa(dirPath, ...)

Arguments

dirPath A character vector or other object (e.g., SolexaPath; see showMethods, below) locating the data for which quality assessment is to be performed. See help pages for defined methods (by evaluating the example code, below) for details of available methods.
... Additional arguments used by methods.

Details

The following methods are defined:

Value

An object derived from class .QA

Author(s)

Martin Morgan <mtmorgan@fhcrc.org>

See Also

.QA, SolexaExportQA MAQMapQA FastqQA

Examples

showMethods("qa")

[Package ShortRead version 1.2.1 Index]