BowtieQA-class {ShortRead} | R Documentation |
This class contains a list-like structure with summary descriptions derived from visiting one or more Solexa ‘export’ files.
Objects of the class are usually produced by a qa
method, with the argument type="Bowtie"
.
.srlist
:"list"
, containing
data frames or lists of data frames summarizing the results of
qa.
Class "SRList"
, directly.
Class ".QA"
, directly.
Class ".SRUtil"
, by class "SRList", distance 2.
Class ".ShortReadBase"
, by class ".QA", distance 2.
Accessor methods are inheritted from the SRList
class.
signature(x="BowtieQA", ...,
dest=tempfile(), type="html")
: produces an
html file summarizing the QA results.Martin Morgan <mtmorgan@fhcrc.org>
qa
.
showClass("BowtieQA")