aqm.writereport {arrayQualityMetrics} | R Documentation |
aqm.writereport
performs an html report from a list
of aqmobj objects. It includes a summary with the outliers detected, titles, plots and legends.
aqm.writereport(name, expressionset, obj)
name |
A name to customize the title of the report that will be "name quality metrics report" |
expressionset |
The expressionset on which the metrics have been run |
obj |
A list of aqmobj.xxx objects |
An html report named 'QMreport.html' in the working directory.
Audrey Kauffmann <audrey@ebi.ac.uk>
library("ALLMLL") data(MLL.A) MLLprep = aqm.prepdata(MLL.A, TRUE) bo = aqm.boxplot(MLL.A, MLLprep) de = aqm.density(MLL.A, MLLprep) obj = list("Boxplot" = bo, "Density" = de) aqm.writereport("Test", MLL.A, obj)