aqm.writereport {arrayQualityMetrics}R Documentation

Writes a report from objects produced with aqm.xxx functions.

Description

aqm.writereport performs an html report from a list of aqmobj objects. It includes a summary with the outliers detected, titles, plots and legends.

Usage

 aqm.writereport(name, expressionset, obj) 

Arguments

name A name to customize the title of the report that will be "name quality metrics report"
expressionset The expressionset on which the metrics have been run
obj A list of aqmobj.xxx objects

Value

An html report named 'QMreport.html' in the working directory.

Author(s)

Audrey Kauffmann <audrey@ebi.ac.uk>

Examples

       library("ALLMLL")
       data(MLL.A) 
       MLLprep = aqm.prepdata(MLL.A, TRUE)
       bo = aqm.boxplot(MLL.A, MLLprep)
       de = aqm.density(MLL.A, MLLprep)
       obj = list("Boxplot" = bo, "Density" = de)
       aqm.writereport("Test", MLL.A, obj)

[Package arrayQualityMetrics version 2.2.3 Index]