aqm.boxplot {arrayQualityMetrics} | R Documentation |
aqm.boxplot
performs boxplots, outlier detection from it and
formats the output for aqm.plot
usage.
aqm.boxplot(expressionset, dataprep, intgroup = "Covariate", grouprep = FALSE, ...)
expressionset |
Same input as for the function
arrayQualityMetrics |
dataprep |
An object of class
aqmobj.prepdata |
intgroup |
Same input as for the function
arrayQualityMetrics |
grouprep |
Same input as for the function
arrayQualityMetrics |
... |
Any arguments to bwplot |
See the aqm.prepdata help or the aqm Vignette for example of this object.
An object of class aqmobj.box
.
Audrey Kauffmann <audrey@ebi.ac.uk>
aqm.prepdata
, aqmobj.prepdata
,
aqmobj.box