tilingProbes {biocDatasets} | R Documentation |
Create tiling probes or ranges
tilingProbes(width, step, template_seq) tilingIRanges(width, step, from, to)
from |
start position for the tiling |
step |
increment in the starting index between one probe and the next. |
template_seq |
template sequence from which tiling probes are to be extracted |
to |
end position for the tiling |
width |
width for the probes |
tilingProbes
and tilingIRanges
return
a DNAStringSet
and a IRanges
respectively.
dna <- randomDNASequences(1, 30)[[1]] tip <- tilingProbes(10, 2, dna) # ASCII-art cat(as.character(dna), "\n") for (i in 1:length(tip)) { cat(paste(rep("|", (i-1)*2), collapse=""), as.character(tip[[i]]), "\n", sep="") } cat(as.character(dna), "\n")