listMarts {biomaRt} | R Documentation |
This function returns a list of BioMart databases to which biomaRt can connect to. By default all public BioMart databases are displayed. To establish a connection use the useMart function.
listMarts(mart, host="www.biomart.org", path="/biomart/martservice", port=80, includeHosts = FALSE, archive=FALSE, user, password,mysql=FALSE)
mart |
mart object created with the useMart function |
host |
host to connect to if different then www.biomart.org |
path |
path to martservice that should be pasted behind the host to get to web service URL |
port |
port to use in HTTP communication |
includeHosts |
boolean to indicate if function should return host of the BioMart databases |
archive |
Boolean to indicate if you want to access archived versions of BioMart database |
user |
MySQL access is no longer available through this package |
password |
MySQL access is no longer available through this package |
mysql |
MySQL access is no longer available through this package. All queries can be made through the web service mode. use mysql=FALSE |
Steffen Durinck, http://www.stat.berkeley.edu/~steffen
if(interactive()){ listMarts() }