crlmm-package |
Genotype Calling via CRLMM Algorithm |
calls |
Accessors for Calls and Confidences on a SnpSet object |
calls,SnpSet-method |
Accessors for Calls and Confidences on a SnpSet object |
celDates |
Extract dates from the cel file header |
cnrma |
Quantile normalizes the intensities for the nonpolymorphic probe to a HapMap reference distribution. |
computeCopynumber |
Computes copy number |
confs |
Accessors for Calls and Confidences on a SnpSet object |
confs,SnpSet-method |
Accessors for Calls and Confidences on a SnpSet object |
crlmm |
Genotype oligonucleotide arrays with CRLMM |
crlmmIllumina |
Genotype Illumina Infinium II BeadChip data with CRLMM |
list.celfiles |
List CEL files. |
readIdatFiles |
Reads Idat Files from Infinium II Illumina BeadChips |
snprma |
Preprocessing tool for SNP arrays. |