deDGEList-class {edgeR} | R Documentation |
A simple list-based class for storing results of differential expression analysis for DGE data
Objects of this class contain the following list components:
ps
: list containing estimates of p
parameter.
r
: numeric vector of size parameter (1/phi
) where phi
is negative binomial dispersion.
pseudo
: numeric matrix with the pseudo-counts.
group
: vector giving the experimental group/condition.
M
: numeric scalar with the library size that pseudo counts are mapped to.
This class inherits directly from class list
so any operation appropriate for lists will work on objects of this class.
deDGEList
objects also have a show
method.
Mark Robinson, Davis McCarthy