deDGEList-class {edgeR}R Documentation

differential expression of Digital Gene Expression data - class

Description

A simple list-based class for storing results of differential expression analysis for DGE data

Slots/List Components

Objects of this class contain the following list components: ps: list containing estimates of p parameter. r: numeric vector of size parameter (1/phi) where phi is negative binomial dispersion. pseudo: numeric matrix with the pseudo-counts. group: vector giving the experimental group/condition. M: numeric scalar with the library size that pseudo counts are mapped to.

Methods

This class inherits directly from class list so any operation appropriate for lists will work on objects of this class. deDGEList objects also have a show method.

Author(s)

Mark Robinson, Davis McCarthy


[Package edgeR version 1.2.4 Index]