alpha.approxeb |
Estimate the prior weight, alpha |
approx.expected.info |
Approximate of expected information (Fisher information) |
condLogLikDerDelta |
Conditional log-likelihood in terms of delta |
condLogLikDerSize |
Conditional log-likelihood in terms of size |
deDGE |
Compute moderated differential expression scores for digital gene expression (DGE) data |
deDGEList-class |
differential expression of Digital Gene Expression data - class |
DGEList |
Digital Gene Expression data - class |
DGEList-class |
Digital Gene Expression data - class |
EBList-class |
differential expression of Digital Gene Expression data - class |
estimatePs |
Estimate expression proportions |
exactTestNB |
An exact test for differences between two negative binomial groups |
findMaxD2 |
Maximizes the negative binomial likelihood |
getData |
Extract data table from DGEList object |
interpolateHelper |
Quantile Adjustment interpolator |
logLikDerP |
Log-likelihood for proportion |
NC1 |
Raw data for several SAGE libraries from the Zhang 1997 Science paper. |
NC2 |
Raw data for several SAGE libraries from the Zhang 1997 Science paper. |
plotMA |
MA-like plot for deDGEList objects |
quantileAdjust |
Normalizes a dataset by using a quantile adjustment |
readDGE |
Read a list of files containing DGE data |
show,deDGEList-method |
differential expression of Digital Gene Expression data - class |
show,DGEList-method |
Digital Gene Expression data - class |
show,EBList-method |
differential expression of Digital Gene Expression data - class |
splitIntoGroups |
Split the data from a DGEList object according to group |
splitIntoGroupsPseudo |
Split pseudodata according to group |
tau2.0.objective |
Objective function for tau2 |
topTags |
Displays the top differentially expressed tags in a table |
Tu102 |
Raw data for several SAGE libraries from the Zhang 1997 Science paper. |
Tu98 |
Raw data for several SAGE libraries from the Zhang 1997 Science paper. |