!,filter-method |
A class for representing filtering operations to be applied to flow data. |
$,filterSummary,ANY-method |
Class "filterSummary" |
$,flowSet,character-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
$,workFlow,character-method |
Class "workFlow" |
$.flowFrame |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
%&% |
Take the intersection of two filters |
%&%,ANY-method |
Take the intersection of two filters |
%&%,filter,filter-method |
Take the intersection of two filters |
%&%-methods |
Take the intersection of two filters |
%in% |
Filter-specific membership methods |
%in%,ANY,filterReference-method |
Filter-specific membership methods |
%in%,ANY,filterResult-method |
Filter-specific membership methods |
%in%,ANY,manyFilterResult-method |
Filter-specific membership methods |
%in%,ANY,multipleFilterResult-method |
Filter-specific membership methods |
%in%,flowFrame,boundaryFilter-method |
Filter-specific membership methods |
%in%,flowFrame,complementFilter-method |
Filter-specific membership methods |
%in%,flowFrame,curv1Filter-method |
Filter-specific membership methods |
%in%,flowFrame,curv2Filter-method |
Filter-specific membership methods |
%in%,flowFrame,ellipsoidGate-method |
Filter-specific membership methods |
%in%,flowFrame,expressionFilter-method |
Filter-specific membership methods |
%in%,flowFrame,filterResult-method |
Filter-specific membership methods |
%in%,flowFrame,intersectFilter-method |
Filter-specific membership methods |
%in%,flowFrame,kmeansFilter-method |
Filter-specific membership methods |
%in%,flowFrame,norm2Filter-method |
Filter-specific membership methods |
%in%,flowFrame,polygonGate-method |
Filter-specific membership methods |
%in%,flowFrame,polytopeGate-method |
Filter-specific membership methods |
%in%,flowFrame,quadGate-method |
Filter-specific membership methods |
%in%,flowFrame,rectangleGate-method |
Filter-specific membership methods |
%in%,flowFrame,sampleFilter-method |
Filter-specific membership methods |
%in%,flowFrame,subsetFilter-method |
Filter-specific membership methods |
%in%,flowFrame,timeFilter-method |
Filter-specific membership methods |
%in%,flowFrame,transformFilter-method |
Filter-specific membership methods |
%in%,flowFrame,unionFilter-method |
Filter-specific membership methods |
%in%-methods |
Filter-specific membership methods |
%on% |
Methods for Function \%on\% in Package 'flowCore' |
%on%,ANY,flowSet-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,filter,parameterTransform-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,filter,transform-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,filter,transformList-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,parameterTransform,flowFrame-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,transform,flowFrame-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,transformList,flowFrame-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%,transformList,flowSet-method |
Methods for Function \%on\% in Package 'flowCore' |
%on%-methods |
Methods for Function \%on\% in Package 'flowCore' |
%subset% |
Take the intersection of two filters |
%subset%,ANY-method |
Take the intersection of two filters |
%subset%,filter,filter-method |
Take the intersection of two filters |
%subset%,filterSet,filter-method |
Class filterSet |
%subset%,list,filter-method |
Take the intersection of two filters |
&,filter,filter-method |
Take the intersection of two filters |
&,filter,list-method |
Take the intersection of two filters |
&,list,filter-method |
Take the intersection of two filters |
*,rectangleGate,rectangleGate-method |
Class "rectangleGate" |
<,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
<=,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
==,filterResult,flowFrame-method |
Class "filterResult" |
==,flowFrame,filterResult-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
==,flowFrame,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
>,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
>=,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
c,transformList-method |
Class "transformList" |
call,filter-method |
Filter FCS files |
cbind2,flowFrame,matrix-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
cbind2,flowFrame,numeric-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
char2ExpressionFilter |
Class "expressionFilter" |
character,filter-method |
Filter FCS files |
characterOrTransformation-class |
Class "characterOrTransformation" |
cleanup |
Read an FCS file |
coerce |
Convert an object to another class |
coerce,call,filter-method |
Convert an object to another class |
coerce,character,filter-method |
Convert an object to another class |
coerce,complementFilter,call-method |
Convert an object to another class |
coerce,complementFilter,logical-method |
Convert an object to another class |
coerce,ellipsoidGate,polygonGate-method |
Convert an object to another class |
coerce,environment,flowSet-method |
Convert an object to another class |
coerce,factor,filterResult-method |
Convert an object to another class |
coerce,filter,call-method |
Convert an object to another class |
coerce,filter,logical-method |
Convert an object to another class |
coerce,filterReference,call-method |
Convert an object to another class |
coerce,filterReference,concreteFilter-method |
Convert an object to another class |
coerce,filterResult,logical-method |
Convert an object to another class |
coerce,filterResultList,list-method |
Convert an object to another class |
coerce,filterSet,list-method |
Convert an object to another class |
coerce,filterSummary,data.frame-method |
Class "filterSummary" |
coerce,flowFrame,filterSet-method |
Convert an object to another class |
coerce,flowFrame,flowSet-method |
Convert an object to another class |
coerce,flowSet,flowFrame-method |
Convert an object to another class |
coerce,flowSet,list-method |
Convert an object to another class |
coerce,formula,filter-method |
Convert an object to another class |
coerce,gateView,filterResult-method |
Convert an object to another class |
coerce,intersectFiler,call-method |
Convert an object to another class |
coerce,intersectFilter,call-method |
Take the intersection of two filters |
coerce,intersectFilter,logical-method |
Convert an object to another class |
coerce,list,filterResultList-method |
Convert an object to another class |
coerce,list,filterSet-method |
Convert an object to another class |
coerce,list,flowSet-method |
Convert an object to another class |
coerce,list,transformList-method |
Convert an object to another class |
coerce,logical,filterResult-method |
Convert an object to another class |
coerce,logicalFilterResult,logical-method |
Convert an object to another class |
coerce,name,filter-method |
Convert an object to another class |
coerce,nullParameter,character-method |
Convert an object to another class |
coerce,numeric,filterResult-method |
Convert an object to another class |
coerce,parameters,character-method |
Convert an object to another class |
coerce,randomFilterResult,logical-method |
Convert an object to another class |
coerce,ratio,character-method |
Convert an object to another class |
coerce,rectangleGate,polygonGate-method |
Convert an object to another class |
coerce,subsetFilter,call-method |
Convert an object to another class |
coerce,subsetFilter,logical-method |
Convert an object to another class |
coerce,transform,character-method |
Convert an object to another class |
coerce,unionFilter,call-method |
Convert an object to another class |
coerce,unionFilter,logical-method |
Convert an object to another class |
coerce,unitytransform,character-method |
Convert an object to another class |
colnames |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
colnames,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
colnames,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
colnames,transformList-method |
Class "transformList" |
colnames<- |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
colnames<-,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
colnames<-,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
compensate |
Class "compensation" |
compensate,flowFrame,compensation-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
compensate,flowFrame,data.frame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
compensate,flowFrame,matrix-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
compensate,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
compensate,flowSet,matrix-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
compensateActionItem |
Class "compensateActionItem" |
compensateActionItem-class |
Class "compensateActionItem" |
compensatedParameter |
Class "compensatedParameter" |
compensatedParameter-class |
Class "compensatedParameter" |
compensateView |
Class "compensateView" |
compensateView-class |
Class "compensateView" |
compensation |
Class "compensation" |
compensation-class |
Class "compensation" |
complementFilter-class |
Class "setOperationFilter" |
concreteFilter-class |
Class "concreteFilter" |
curv1Filter |
Class "curv1Filter" |
curv1Filter-class |
Class "curv1Filter" |
curv2Filter |
Class "curv2Filter" |
curv2Filter-class |
Class "curv2Filter" |
each_col |
Method to apply functions over flowFrame margins |
each_col,flowFrame-method |
Method to apply functions over flowFrame margins |
each_col-methods |
Method to apply functions over flowFrame margins |
each_row |
Method to apply functions over flowFrame margins |
each_row,flowFrame-method |
Method to apply functions over flowFrame margins |
each_row-methods |
Method to apply functions over flowFrame margins |
EHtrans |
Class "EHtrans" |
EHtrans-class |
Class "EHtrans" |
ellipsoidGate |
Class "ellipsoidGate" |
ellipsoidGate,filter-class |
A class for representing filtering operations to be applied to flow data. |
ellipsoidGate-class |
Class "ellipsoidGate" |
eval,asinht,missing,missing-method |
Class "asinht" |
eval,compensatedParameter,missing,missing-method |
Class "compensatedParameter" |
eval,dg1polynomial,missing,missing-method |
Class "dg1polynomial" |
eval,EHtrans,missing,missing-method |
Class "EHtrans" |
eval,exponential,missing,missing-method |
Class "exponential" |
eval,filterReference,missing,missing-method |
Class filterReference |
eval,hyperlog,missing,missing-method |
Class "hyperlog" |
eval,invsplitscale,missing,missing-method |
Class "invsplitscale" |
eval,logarithm,missing,missing-method |
Class "logarithm" |
eval,quadratic,missing,missing-method |
Class "quadratic" |
eval,ratio,missing,missing-method |
Class "ratio" |
eval,sinht,missing,missing-method |
Class "sinht" |
eval,splitscale,missing,missing-method |
Class "splitscale" |
eval,squareroot,missing,missing-method |
Class "squareroot" |
eval,transformReference,missing,missing-method |
Class "transformReference" |
eval,unitytransform,missing,missing-method |
Class "unitytransform" |
exponential |
Class "exponential" |
exponential-class |
Class "exponential" |
expressionFilter |
Class "expressionFilter" |
expressionFilter-class |
Class "expressionFilter" |
exprs |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
exprs,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
exprs<- |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
exprs<-,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
exprs<-,flowFrame,matrix-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
fcActionReference |
Class "fcReference" and its subclasses |
fcActionReference-class |
Class "fcReference" and its subclasses |
fcAliasReference |
Class "fcReference" and its subclasses |
fcAliasReference-class |
Class "fcReference" and its subclasses |
fcCompensateReference |
Class "fcReference" and its subclasses |
fcCompensateReference-class |
Class "fcReference" and its subclasses |
fcDataReference |
Class "fcReference" and its subclasses |
fcDataReference-class |
Class "fcReference" and its subclasses |
fcFilterReference |
Class "fcReference" and its subclasses |
fcFilterReference-class |
Class "fcReference" and its subclasses |
fcFilterResultReference |
Class "fcReference" and its subclasses |
fcFilterResultReference-class |
Class "fcReference" and its subclasses |
fcNormalizationReference |
Class "fcReference" and its subclasses |
fcNormalizationReference-class |
Class "fcReference" and its subclasses |
fcNullReference |
Class "fcReference" and its subclasses |
fcNullReference-class |
Class "fcReference" and its subclasses |
fcReference |
Class "fcReference" and its subclasses |
fcReference-class |
Class "fcReference" and its subclasses |
fcStructureReference-class |
Class "fcReference" and its subclasses |
fcSubsettingReference |
Class "fcReference" and its subclasses |
fcSubsettingReference-class |
Class "fcReference" and its subclasses |
fcTransformReference |
Class "fcReference" and its subclasses |
fcTransformReference-class |
Class "fcReference" and its subclasses |
fcTreeReference |
Class "fcReference" and its subclasses |
fcTreeReference-class |
Class "fcReference" and its subclasses |
fcViewReference |
Class "fcReference" and its subclasses |
fcViewReference-class |
Class "fcReference" and its subclasses |
featureNames |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
featureNames,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
filter |
Filter FCS files |
filter,filter-method |
A class for representing filtering operations to be applied to flow data. |
filter,flowFrame,filter-method |
Filter FCS files |
filter,flowFrame,filterSet-method |
Filter FCS files |
filter,flowFrame,norm2Filter |
Filter FCS files |
filter,flowFrame,polygonGate |
Filter FCS files |
filter,flowFrame,rectangleGate |
Filter FCS files |
filter,flowFrame-method |
Filter FCS files |
filter,flowSet,filter-method |
Filter FCS files |
filter,flowSet,filterList-method |
Filter FCS files |
filter,flowSet,filterSet-method |
Filter FCS files |
filter,flowSet,list-method |
Filter FCS files |
filter-class |
A class for representing filtering operations to be applied to flow data. |
filter-on-methods |
Methods for Function \%on\% in Package 'flowCore' |
filterDetails |
Obtain details about a filter operation |
filterDetails,filterResult,ANY-method |
Obtain details about a filter operation |
filterDetails,filterResult,missing-method |
Obtain details about a filter operation |
filterDetails-methods |
Obtain details about a filter operation |
filterDetails<- |
Obtain details about a filter operation |
filterDetails<-,filterResult,character,ANY-method |
Obtain details about a filter operation |
filterDetails<-,filterResult,character,filter-method |
Obtain details about a filter operation |
filterDetails<-,filterResult,character,setOperationFilter-method |
Obtain details about a filter operation |
filtergate,filter-class |
A class for representing filtering operations to be applied to flow data. |
filterList |
Class "filterList" |
filterList-class |
Class "filterList" |
filterReference |
Class filterReference |
filterReference,environment,character-method |
Class filterReference |
filterReference,filterSet,character-method |
Class filterSet |
filterReference-class |
Class filterReference |
filterResult |
Class "filterResult" |
filterResult-class |
Class "filterResult" |
filterResultList |
Class "filterResultList" |
filterResultList-class |
Class "filterResultList" |
filterSet |
Class filterSet |
filterSet-class |
Class filterSet |
filterSummary |
Class "filterSummary" |
filterSummary-class |
Class "filterSummary" |
filterSummaryList |
Class "filterSummaryList" |
filterSummaryList-class |
Class "filterSummaryList" |
flowFrame |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
flowFrame-class |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
flowSet |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
flowSet-class |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
formula,filter-method |
Filter FCS files |
fsApply |
Apply a Function over values in a flowSet |
fsApply,flowSet,ANY |
Apply a Function over values in a flowSet |
fsApply,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
identifier |
Retrieve the GUID of flowCore objects |
identifier,actionItem-method |
Class "actionItem" |
identifier,compensation-method |
Class "compensation" |
identifier,fcReference-method |
Class "fcReference" and its subclasses |
identifier,filter-method |
Retrieve the GUID of flowCore objects |
identifier,filterList-method |
Class "filterList" |
identifier,filterReference-method |
Retrieve the GUID of flowCore objects |
identifier,filterResult-method |
Retrieve the GUID of flowCore objects |
identifier,filterSet,character-method |
Class filterSet |
identifier,filterSet-method |
Class filterSet |
identifier,flowFrame-method |
Retrieve the GUID of flowCore objects |
identifier,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
identifier,normalization-method |
Class "normalization" |
identifier,NULL-method |
Class "view" |
identifier,subsetting-method |
Class "subsetting" |
identifier,transform-method |
Retrieve the GUID of flowCore objects |
identifier,transformList-method |
Class "transformList" |
identifier,view-method |
Class "view" |
identifier-methods |
Retrieve the GUID of flowCore objects |
identifier<- |
Retrieve the GUID of flowCore objects |
identifier<-,compensation,character-method |
Class "compensation" |
identifier<-,filter,character-method |
Filter FCS files |
identifier<-,filterList,character-method |
Class "filterList" |
identifier<-,flowFrame,ANY-method |
Retrieve the GUID of flowCore objects |
identifier<-,flowFrame-method |
Retrieve the GUID of flowCore objects |
identifier<-,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
identifier<-,normalization,character-method |
Class "normalization" |
identifier<-,subsetting,character-method |
Class "subsetting" |
identifier<-,transformList,character-method |
Class "transformList" |
initialize,dg1polynomial-method |
Class "dg1polynomial" |
initialize,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
initialize,parameterFilter-method |
Class "parameterFilter" |
initialize,ratio-method |
Class "ratio" |
initialize,singleParameterTransform-method |
Class "singleParameterTransform" |
intersectFilter-class |
Class "setOperationFilter" |
intersectFilter-method |
Take the intersection of two filters |
invsplitscale |
Class "invsplitscale" |
invsplitscale-class |
Class "invsplitscale" |
isFCSfile |
Read an FCS file |
isNull |
Class "fcReference" and its subclasses |
isNull,fcReference-method |
Class "fcReference" and its subclasses |
parameterFilter-class |
Class "parameterFilter" |
parameters |
Obtain information about parameters for flow cytometry objects. |
parameters,compensation-method |
Class "compensation" |
parameters,filter-method |
Obtain information about parameters for flow cytometry objects. |
parameters,filterReference-method |
Obtain information about parameters for flow cytometry objects. |
parameters,filterResult-method |
Obtain information about parameters for flow cytometry objects. |
parameters,filterResultList-method |
Class "filterResultList" |
parameters,flowFrame,missing-method |
Obtain information about parameters for flow cytometry objects. |
parameters,flowFrame-method |
Obtain information about parameters for flow cytometry objects. |
parameters,manyFilterResult-method |
Class "manyFilterResult" |
parameters,normalization-method |
Class "normalization" |
parameters,nullParameter-method |
Obtain information about parameters for flow cytometry objects. |
parameters,parameterFilter-method |
Obtain information about parameters for flow cytometry objects. |
parameters,parameterTransform-method |
Obtain information about parameters for flow cytometry objects. |
parameters,ratio-method |
Obtain information about parameters for flow cytometry objects. |
parameters,setOperationFilter-method |
Obtain information about parameters for flow cytometry objects. |
parameters,transform-method |
Obtain information about parameters for flow cytometry objects. |
parameters,transformReference-method |
Class "transformReference" |
parameters-class |
Class "parameters" |
parameters<- |
Obtain information about parameters for flow cytometry objects. |
parameters<-,dg1polynomial,character-method |
Class "dg1polynomial" |
parameters<-,dg1polynomial,parameters-method |
Class "dg1polynomial" |
parameters<-,dg1polynomial,transform-method |
Obtain information about parameters for flow cytometry objects. |
parameters<-,flowFrame,AnnotatedDataFrame-method |
Obtain information about parameters for flow cytometry objects. |
parameters<-,parameterFilter,character-method |
Obtain information about parameters for flow cytometry objects. |
parameters<-,parameterFilter,list-method |
Obtain information about parameters for flow cytometry objects. |
parameters<-,parameterFilter,transform-method |
Obtain information about parameters for flow cytometry objects. |
parameters<-,singleParameterTransform,character-method |
Obtain information about parameters for flow cytometry objects. |
parameters<-,singleParameterTransform,transform-method |
Obtain information about parameters for flow cytometry objects. |
parameterTransform-class |
Class "parameterTransform" |
parent |
Class "view" |
parent,actionItem-method |
Class "actionItem" |
parent,NULL-method |
Class "view" |
parent,view-method |
Class "view" |
pData,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
pData<-,flowSet,data.frame-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
phenoData,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
phenoData<-,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
phenoData<-,flowSet,phenoData-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
plot,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
plot,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
plot,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
plot,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
plot,workFlow,missing-method |
Class "workFlow" |
polygonGate |
Class "polygonGate" |
polygonGate,filter-class |
A class for representing filtering operations to be applied to flow data. |
polygonGate-class |
Class "polygonGate" |
polytopeGate |
Define filter boundaries |
polytopeGate-class |
Define filter boundaries |
print,compensateActionItem-method |
Class "compensateActionItem" |
print,filterSummary-method |
Class "filterSummary" |
print,gateActionItem-method |
Class "gateActionItem" |
print,normalizeActionItem-method |
Class "normalizeActionItem" |
print,subsettingActionItem-method |
Class "subsettingActionItem" |
print,transformActionItem-method |
Class "transformActionItem" |
print,view-method |
Class "view" |
randomFilterResult-class |
Class "randomFilterResult" |
range |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
range,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
ratio |
Class "ratio" |
ratio-class |
Class "ratio" |
rbind2,flowFrame,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
rbind2,flowSet,flowFrame-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
rbind2,flowSet,flowSet,missing-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
rbind2,flowSet,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
rbind2,flowSet,missing |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
rbind2,flowSet,missing-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
read.FCS |
Read an FCS file |
read.FCSheader |
Read the TEXT section of a FCS file |
read.flowSet |
Read a set of FCS files |
rectangleGate |
Class "rectangleGate" |
rectangleGate,filter-class |
A class for representing filtering operations to be applied to flow data. |
rectangleGate-class |
Class "rectangleGate" |
Rm |
Class "fcReference" and its subclasses |
Rm,actionItem,workFlow,character-method |
Class "actionItem" |
Rm,character,workFlow,character-method |
Class "workFlow" |
Rm,compensateActionItem,workFlow,character-method |
Class "compensateActionItem" |
Rm,compensateView,workFlow,character-method |
Class "compensateView" |
Rm,fcNullReference,missing,character-method |
Class "fcReference" and its subclasses |
Rm,fcReference,missing,character-method |
Class "fcReference" and its subclasses |
Rm,fcReference,workFlow,character-method |
Class "fcReference" and its subclasses |
Rm,gateActionItem,workFlow,character-method |
Class "gateActionItem" |
Rm,gateView,workFlow,character-method |
Class "gateView" |
Rm,normalizeActionItem,workFlow,character-method |
Class "normalizeActionItem" |
Rm,normalizeView,workFlow,character-method |
Class "normalizeView" |
Rm,subsettingActionItem,workFlow,character-method |
Class "subsettingActionItem" |
Rm,subsettingView,workFlow,character-method |
Class "subsettingView" |
Rm,transformActionItem,workFlow,character-method |
Class "transformActionItem" |
Rm,transformView,workFlow,character-method |
Class "transformView" |
Rm,view,workFlow,character-method |
Class "view" |
sampleFilter |
Class "sampleFilter" |
sampleFilter-class |
Class "sampleFilter" |
sampleNames,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
sampleNames<-,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
scaleTransform |
Create the definition of a scale transformation function to be applied on a data set |
setOperationFilter-class |
Class "setOperationFilter" |
show,boundaryFilter-method |
Class "boundaryFilter" |
show,compensateActionItem-method |
Class "compensateActionItem" |
show,compensation-method |
Class "compensation" |
show,complementFilter-method |
Class "setOperationFilter" |
show,curv1Filter-method |
Class "curv1Filter" |
show,curv2Filter-method |
Class "curv2Filter" |
show,ellipsoidGate-method |
Class "ellipsoidGate" |
show,expressionFilter-method |
Class "expressionFilter" |
show,fcNullReference-method |
Class "fcReference" and its subclasses |
show,fcReference-method |
Class "fcReference" and its subclasses |
show,filter-method |
Filter FCS files |
show,filterList-method |
Class "filterList" |
show,filterReference-method |
Class filterReference |
show,filterResult-method |
Class "filterResult" |
show,filterResultList-method |
Class "filterResultList" |
show,filterSet-method |
Class filterSet |
show,filterSummary-method |
Class "filterSummary" |
show,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
show,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
show,gateActionItem-method |
Class "gateActionItem" |
show,intersectFilter-method |
Class "setOperationFilter" |
show,kmeansFilter-method |
Class "kmeansFilter" |
show,manyFilterResult-method |
Class "manyFilterResult" |
show,multipleFilterResult-method |
Class "multipleFilterResult" |
show,norm2Filter-method |
Class "norm2Filter" |
show,normalizeActionItem-method |
Class "normalizeActionItem" |
show,polygonGate-method |
Class "polygonGate" |
show,polytopeGate-method |
Define filter boundaries |
show,quadGate-method |
Class "quadGate" |
show,rectangleGate-method |
Class "rectangleGate" |
show,sampleFilter-method |
Class "sampleFilter" |
show,subsetFilter-method |
Class "setOperationFilter" |
show,subsetting-method |
Class "subsetting" |
show,subsettingActionItem-method |
Class "subsettingActionItem" |
show,timeFilter-method |
Class "timeFilter" |
show,transform-method |
'transform': a class for transforming flow-cytometry data by applying scale factors. |
show,transformActionItem-method |
Class "transformActionItem" |
show,transformFilter-method |
A class for encapsulating a filter to be performed on transformed parameters |
show,transformMap-method |
A class for mapping transforms between parameters |
show,unionFilter-method |
Class "setOperationFilter" |
show,unitytransform-method |
Class "unitytransform" |
show,view-method |
Class "view" |
show,workFlow-method |
Class "workFlow" |
singleParameterTransform-class |
Class "singleParameterTransform" |
sinht |
Class "sinht" |
sinht-class |
Class "sinht" |
sort,filterSet-method |
Class filterSet |
spillover |
Compute a spillover matrix from a flowSet |
spillover,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
spillover,flowSet-method |
Compute a spillover matrix from a flowSet |
split |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,ANY-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,character-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,factor-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,filter-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,filterSet-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,logicalFilterResult-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,manyFilterResult-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,multipleFilterResult-method |
Methods to split flowFrames and flowSets according to filters |
split,flowFrame,numeric-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,ANY-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,character-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,factor-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,filter-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,filterResult-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,filterResultList-method |
Class "filterResultList" |
split,flowSet,list-method |
Methods to split flowFrames and flowSets according to filters |
split,flowSet,numeric-method |
Methods to split flowFrames and flowSets according to filters |
split-methods |
Methods to split flowFrames and flowSets according to filters |
splitscale |
Class "splitscale" |
splitscale-class |
Class "splitscale" |
splitScaleTransform |
Compute the split-scale transformation describe by FL. Battye |
squareroot |
Class "squareroot" |
squareroot-class |
Class "squareroot" |
Subset |
Subset a flowFrame or a flowSet |
Subset,flowFrame,filter-method |
Subset a flowFrame or a flowSet |
Subset,flowFrame,logical-method |
Subset a flowFrame or a flowSet |
Subset,flowFrame-method |
Subset a flowFrame or a flowSet |
Subset,flowSet,ANY |
Subset a flowFrame or a flowSet |
Subset,flowSet,ANY-method |
Subset a flowFrame or a flowSet |
Subset,flowSet,filterResultList-method |
Subset a flowFrame or a flowSet |
Subset,flowSet,list-method |
Subset a flowFrame or a flowSet |
subsetFilter-class |
Class "setOperationFilter" |
subsetFilter-method |
Take the intersection of two filters |
subsetting |
Class "subsetting" |
subsetting-class |
Class "subsetting" |
subsettingActionItem |
Class "subsettingActionItem" |
subsettingActionItem-class |
Class "subsettingActionItem" |
subsettingView |
Class "subsettingView" |
subsettingView-class |
Class "subsettingView" |
summarizeFilter |
Methods for function summarizeFilter |
summarizeFilter,filterResult,filter-method |
Methods for function summarizeFilter |
summarizeFilter,filterResult,filterReference-method |
Methods for function summarizeFilter |
summarizeFilter,filterResult,parameterFilter-method |
Methods for function summarizeFilter |
summarizeFilter,filterResult,subsetFilter-method |
Methods for function summarizeFilter |
summarizeFilter,logicalFilterResult,norm2Filter-method |
Methods for function summarizeFilter |
summarizeFilter,logicalFilterResult,parameterFilter-method |
Methods for function summarizeFilter |
summarizeFilter,multipleFilterResult,curv1Filter-method |
Methods for function summarizeFilter |
summarizeFilter,multipleFilterResult,curv2Filter-method |
Methods for function summarizeFilter |
summarizeFilter,multipleFilterResult,parameterFilter-method |
Methods for function summarizeFilter |
summarizeFilter-methods |
Methods for function summarizeFilter |
summary |
Class "filterSummary" |
summary,filter-method |
Filter FCS files |
summary,filterReference-method |
Class filterReference |
summary,filterResult-method |
Class "filterResult" |
summary,filterResultList-method |
Class "filterResultList" |
summary,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
summary,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
summary,gateActionItem-method |
Class "gateActionItem" |
summary,gateView-method |
Class "gateView" |
summary,logicalFilterResult-method |
Class "logicalFilterResult" |
summary,manyFilterResult-method |
Class "manyFilterResult" |
summary,multipleFilterResult-method |
Class "multipleFilterResult" |
summary,rectangleGate-method |
Class "rectangleGate" |
summary,subsetFilter-method |
Class "setOperationFilter" |
summary,transform-method |
'transform': a class for transforming flow-cytometry data by applying scale factors. |
summary,workFlow-method |
Class "workFlow" |
[,filterResultList,ANY-method |
Class "filterResultList" |
[,filterSet,character-method |
Class filterSet |
[,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
[,flowFrame,filter-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
[,flowFrame,filterResult-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
[,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[,multipleFilterResult,ANY-method |
Class "multipleFilterResult" |
[,rectangleGate,ANY-method |
Class "rectangleGate" |
[,rectangleGate,character-method |
Class "rectangleGate" |
[,workFlow,ANY-method |
Class "workFlow" |
[[,filterResult,ANY-method |
Class "filterResult" |
[[,filterResultList,ANY-method |
Class "filterResultList" |
[[,filterSet,character-method |
Class filterSet |
[[,filterSummary,character-method |
Class "filterSummary" |
[[,filterSummary,numeric-method |
Class "filterSummary" |
[[,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[[,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[[,logicalFilterResult,ANY-method |
Class "logicalFilterResult" |
[[,manyFilterResult,ANY-method |
Class "manyFilterResult" |
[[,manyFilterResult-method |
Class "manyFilterResult" |
[[,multipleFilterResult,ANY-method |
Class "multipleFilterResult" |
[[,multipleFilterResult-method |
Class "multipleFilterResult" |
[[,workFlow,ANY-method |
Class "workFlow" |
[[<-,filterSet,ANY,ANY,filterReference-method |
Class filterSet |
[[<-,filterSet,character,ANY,filter-method |
Class filterSet |
[[<-,filterSet,character,ANY,formula-method |
Class filterSet |
[[<-,filterSet,missing,ANY,filter |
Class filterSet |
[[<-,filterSet,missing,ANY,filter-method |
Class filterSet |
[[<-,filterSet,NULL,ANY,filter-method |
Class filterSet |
[[<-,filterSet,NULL,ANY,formula-method |
Class filterSet |
[[<-,flowFrame-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[[<-,flowSet,ANY,ANY,flowFrame-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[[<-,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
|,filter,filter-method |
A class for representing filtering operations to be applied to flow data. |
|,filter,list-method |
A class for representing filtering operations to be applied to flow data. |
|,list,filter-method |
A class for representing filtering operations to be applied to flow data. |