qaProcess.BoundaryPlot {flowQ} | R Documentation |
This function takes a list of flowSet
as input and
creates all necessary output for a 'BoundaryPlot' type QA
process. Objects created by this function can be laid out as HTML
using writeQAReport
.
qaProcess.BoundaryPlot(flowList,dyes=NULL, outdir="QAReport",cutoff=3, det.dimensions=c(400,400),pdf=FALSE,...)
flowList |
A list of flowSet |
dyes |
Flow parameters to be compared across multiple samples.
If set to NULL, all parameters that are duplicated across the list of
flowSet are identified and compared.
|
outdir |
The directory to which the graphical output is to be saved. If multiple QA processes are to be combined, make sure to use the same directory every time. |
cutoff |
A numeric value for the percentage of boundary events that is used by the process to identify samples that failed the QA process |
det.dimensions |
the dimensions of each image generated by the QA process. |
pdf |
boolen value determinining if pdf files or jpeg images will be produced by the QA process |
... |
Further arguments. |
QA processes of type 'BoundaryPlot' helps identify samples that have a large number of boundary events that must be removed by further gating before detailed analysis of the data.
For more details on how to layout qaProcess
objects to
HTML, see writeQAReport
and qaReport
.
An object of class qaProcess
.
Nishant Gopalakrishnan
writeQAReport
, qaReport
,
qaProcess
,qaProcess.DensityPlot
, qaProcess.ECDFPlot
data(qData) dest <- tempdir() resBoundary <- qaProcess.BoundaryPlot(qData, dyes=c("FSC-A","CD3"), outdir=dest, cutoff=3, pdf=TRUE) resBoundary