autoGate {flowStats} | R Documentation |
This function tries to fit a single norm2Filter based on a rough
preselection of the data. This function is considered internal. Please
use the API provided by lymphGate
.
autoGate(x, ..., scale = 2.5)
x |
An object of class flowSet |
... |
Named arguments or a list of the ranges used for the
initial rough preselection. This gets passed on to
rectangleGate , see it's documentation for
details. |
scale |
The scale parameter that gets passed on to
norm2Filter . |
The flowSet
is first filtered using a rectangleGate
and
the norm2Filter
is subsequently fitted to the remaining subset.
A list with items:
x |
The filtered flowSet . |
n2gate |
The norm2Filter object. |
n2gateResults |
The filterResult after
applying the norm2Filter on the flowSet . |
Florian Hahne
data(GvHD) flowStats:::autoGate(GvHD[10:15], "FSC-H"=c(100,500), "SSC-H"=c(0, 400))