ORF2Entrez {gene2pathway}R Documentation

Conversion locus tag -> Entrez ID and Entrez ID -> locus tag according to KEGG

Description

Conversion locus tag -> Entrez ID and Entrez ID -> locus tag according to KEGG (see <URL:ftp://ftp.genome.jp/pub/kegg/genes/organisms/>)

Usage

        ORF2Entrez(ORFIDs, organism="dme")
        Entrez2ORF(entrezIDs, organism="dme")

Arguments

ORFIDs character vector of locus tags / ORF identifiers
organism KEGG letter code describing an organism. Please refer to <URL:http://www.genome.jp/kegg-bin/create_kegg_menu> for a complete list of organisms (and their letter codes) supported by KEGG.
entrezIDs character vector of Entrez gene IDs

Value

character vector

Examples

        entrez=ORF2Entrez("Dmel_CG4942", organism="dme")
        Entrez2ORF(entrez, organism="dme") # should be "Dmel_CG4942"

[Package gene2pathway version 1.2.0 Index]