interval_overlap {genomeIntervals} | R Documentation |
Given two objects, a 'from' and a 'to', assess which intervals in 'to' overlap which of 'from'.
## S4 method for signature 'Genome_intervals, ## Genome_intervals': interval_overlap( from, to, check_valid = TRUE ) ## S4 method for signature 'Genome_intervals_stranded, ## Genome_intervals_stranded': interval_overlap( from, to, check_valid = TRUE )
from |
A Genome_intervals or Genome_intervals_stranded object.
|
to |
A Genome_intervals or Genome_intervals_stranded object. |
check_valid |
Should validObject be called before passing to
compiled code?
|
A wrapper calling intervals:interval_overlap
by seq_name
and by strand
(if both to
and from
are "Genome_intervals_stranded"
objects).
A list, with one element for each row of from
. The elements
are vectors of indices, indicating which to
rows overlap
each from. A list element of length 0 indicates a from with no
overlapping to intervals.
data(gen_ints) # i as entered i # i in close_intervals notation close_intervals(i) # j in close_intervals notation close_intervals(j) # list of intervals of j overlapping intervals of i interval_overlap(i,j)