genomeIntervals-package {genomeIntervals}R Documentation

Operations on genomic intervals

Description

Tools for operation on genomic intervals.

Details

Package: genomeIntervals
Version: 0.9.6
Date: 2009-01-15
Type: Package
Depends: R (>= 2.8.0), intervals (>= 0.10.3), Biobase, methods
Suggests:
License: Artistic 2.0
BiocViews: DataImport, Infrastructure, Genetics
LazyLoad: yes

Index:

Genome_intervals
Class "Genome_intervals"
Genome_intervals_stranded
Class "Genome_intervals_stranded"
distance_to_nearest
Distance in bases to the closest interval(s)
gen_ints
Genome Intervals examples
getGffAttribute
Pull one or more key/value pairs from gffAttributes strings
interval_overlap
Assess overlap from one set of genomic intervals to another
interval_complement
Compute the complement of a set of genomic intervals
interval_intersection
Compute the intersection of one or more sets of genomic intervals
interval_union
Compute the union of genomic intervals in one or more genomic interval matrices
parseGffAttributes
Parse out the gffAttributes column of a Genome_intervals object
readGff3
Make a Genome_intervals_stranded object from a GFF file

Author(s)

Julien Gagneur <gagneur@embl.de>, Richard Bourgon.

Maintainer: Julien Gagneur <gagneur@embl.de>

See Also

intervals


[Package genomeIntervals version 1.0.1 Index]