compSummary {goProfiles} | R Documentation |
Function to return a brief summary of the comparison between two (expanded) profiles.
compSummary(l, decs = 6)
l |
A list of comparison results as returned by a call to compareGenelists |
decs |
Number of decimal places to use in the output |
A data frame with the summarized results of each comparison.
The values contained are: Sqr.Eucl.Dist
: The squared euclidean distance,
Standard Err
: The standard error estimate, pValue
p value of the test,
low conf.int
Lower value for the desired confidence interval,
up conf.int
Upper value for the desired condfidence interval.
Alex Sanchez
data(sampleProfiles) comparedMF <-compareGOProfiles (pn=expandedWelsh01[['MF']], qm = expandedSingh01[['MF']], pqn0= commonExpandedWelsh01Singh01[['MF']]) print(comparedMF) print(compSummary(comparedMF))