calls |
Accessors for SnpCallSet |
calls,oligoSnpSet-method |
Methods for oligoSnpSet class |
calls,SnpCallSet-method |
Accessors for SnpCallSet |
calls,SnpLevelSet-method |
Class "SnpLevelSet" |
calls<- |
Accessors for SnpCallSet |
calls<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
calls<-,SnpCallSet,matrix-method |
Accessors for SnpCallSet |
calls<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
callsConfidence |
Accessors for SnpCallSet |
callsConfidence,oligoSnpSet-method |
Methods for oligoSnpSet class |
callsConfidence,SnpCallSet-method |
Accessors for SnpCallSet |
callsConfidence,SnpLevelSet-method |
Class "SnpLevelSet" |
callsConfidence<- |
Accessors for SnpCallSet |
callsConfidence<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
callsConfidence<-,SnpCallSet,matrix-method |
Accessors for SnpCallSet |
callsConfidence<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
chromosome |
Accessor for chromosome information |
chromosome,SnpLevelSet-method |
Class "SnpLevelSet" |
chromosome<- |
Accessor for chromosome information |
chromosome<-,AnnotatedDataFrame,character-method |
Accessor for chromosome information |
chromosome<-,SnpLevelSet,character-method |
Class "SnpLevelSet" |
cnConfidence |
Accessors for SnpCopyNumberSet objects |
cnConfidence,oligoSnpSet-method |
Methods for oligoSnpSet class |
cnConfidence,SnpCopyNumberSet-method |
Accessors for SnpCopyNumberSet objects |
cnConfidence,SnpLevelSet-method |
Class "SnpLevelSet" |
cnConfidence<- |
Accessors for SnpCopyNumberSet objects |
cnConfidence<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
cnConfidence<-,SnpCopyNumberSet,matrix-method |
Accessors for SnpCopyNumberSet objects |
cnConfidence<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
coerce,SnpCallSetPlus,oligoSnpSet-method |
Class "SnpCallSetPlus" |
combine,SnpLevelSet,SnpLevelSet-method |
Class "SnpLevelSet" |
copyNumber |
Accessors for SnpCopyNumberSet objects |
copyNumber,oligoSnpSet-method |
Methods for oligoSnpSet class |
copyNumber,SnpCopyNumberSet-method |
Accessors for SnpCopyNumberSet objects |
copyNumber,SnpLevelSet-method |
Class "SnpLevelSet" |
copyNumber<- |
Accessors for SnpCopyNumberSet objects |
copyNumber<-,oligoSnpSet,matrix-method |
Methods for oligoSnpSet class |
copyNumber<-,SnpCopyNumberSet,matrix-method |
Accessors for SnpCopyNumberSet objects |
copyNumber<-,SnpLevelSet,matrix-method |
Class "SnpLevelSet" |
GeneFeatureSet-class |
"FeatureSet" and "FeatureSet" Extensions |
genomeBuild |
Genome Build Information |
genomeBuild,DBPDInfo-method |
Genome Build Information |
genomeBuild,FeatureSet-method |
Genome Build Information |
geometry |
Array Geometry Information |
geometry,DBPDInfo-method |
Array Geometry Information |
getA |
Compute average log-intensities / log-ratios |
getA,SnpCnvQSet-method |
Compute average log-intensities / log-ratios |
getA,SnpQSet-method |
Compute average log-intensities / log-ratios |
getA,TilingFeatureSet2-method |
Compute average log-intensities / log-ratios |
getM |
Compute average log-intensities / log-ratios |
getM,SnpCnvQSet-method |
Compute average log-intensities / log-ratios |
getM,SnpQSet-method |
Compute average log-intensities / log-ratios |
getM,TilingFeatureSet2-method |
Compute average log-intensities / log-ratios |
getPD |
Retrieve Platform Design object |
getPlatformDesign |
Retrieve Platform Design object |
getPlatformDesign,FeatureSet-method |
Retrieve Platform Design object |
platform |
Platform Information |
platform,FeatureSet-method |
Platform Information |
platform-methods |
Platform Information |
pmAllele |
Access the allele information for PM probes. |
pmAllele,AffySNPPDInfo-method |
Access the allele information for PM probes. |
pmAllele,SnpFeatureSet-method |
Access the allele information for PM probes. |
pmChr |
Accessor for chromosome information |
pmChr,FeatureSet-method |
Accessor for chromosome information |
pmFragmentLength |
Information on Fragment Length |
pmFragmentLength,AffySNPPDInfo-method |
Information on Fragment Length |
pmFragmentLength-methods |
Information on Fragment Length |
pmindex |
Accessors for PM, MM or background probes indices. |
pmindex,DBPDInfo-method |
Accessors for PM, MM or background probes indices. |
pmindex,FeatureSet-method |
Accessors for PM, MM or background probes indices. |
pmOffset |
Accessor to position information |
pmOffset,AffySNPPDInfo-method |
Accessor to position information |
pmPosition |
Accessor to position information |
pmPosition,ExpressionPDInfo-method |
Accessor to position information |
pmPosition,TilingFeatureSet-method |
Accessor to position information |
pmPosition,TilingPDInfo-method |
Accessor to position information |
pmSequence |
Probe Sequeces |
pmSequence,AffySNPPDInfo-method |
Probe Sequeces |
pmSequence,DBPDInfo-method |
Probe Sequeces |
pmSequence,FeatureSet-method |
Probe Sequeces |
pmStrand |
Accessor to the strand information |
pmStrand,AffySNPPDInfo-method |
Accessor to the strand information |
position |
Accessor to position information |
position,SnpLevelSet-method |
Class "SnpLevelSet" |
probeNames |
Accessor to feature names |
probeNames,DBPDInfo-method |
Accessor to feature names |
probeNames,FeatureSet-method |
Accessor to feature names |