basicRMA {oligo}R Documentation

Simplified Interface to RMA

Description

Simple interface to RMA.

Usage

basicRMA(pmMat, pnVec, normalize = TRUE, background = TRUE, bgversion = 2, destructive = FALSE, verbose = TRUE, ...)

Arguments

pmMat Matrix of intensities to be processed.
pnVec Probeset names.
normalize Logical flag: normalize?
background Logical flag: background adjustment?
bgversion Version of background correction.
destructive Logical flag: use destructive methods?
verbose Logical flag: verbose.
... Not currently used.

Value

Matrix.

Examples

set.seed(1)
pms <- matrix(rnorm(1000), nc=20)
colnames(pms) <- paste("sample", 1:20, sep="")
pns <- rep(letters[1:10], each=5)
res <- basicRMA(pms, pns, length(unique(pns)), TRUE, TRUE)
res[, 1:3]

[Package oligo version 1.8.3 Index]