AffySTPDInfoPkgSeed-class {pdInfoBuilder}R Documentation

Class "AffySTPDInfoPkgSeed" for the Sense Target gene-level array

Description

container for parameters related to pdmapping package construction for ST type arrays

Objects from the Class

Objects can be created by calls of the form new("AffySTPDInfoPkgSeed", pgfFile, clfFile, probeFile, transFile, ...).

Slots

pgfFile:
Object of class "ScalarCharacter" path to pgf
clfFile:
Object of class "ScalarCharacter" path to clf
probeFile:
Object of class "ScalarCharacter", path to probe sequence file (Optional)
transFile:
Object of class "ScalarCharacter", path to trans file (Optional)
chipName:
Name of the chip or platform
manufacturer:
chip/platform manufacturer
url:
chip URL
genomebuild:
The genome build this platform is based upon.
organism:
organism for chip.
species:
species for chip.
version:
A character vector giving the version number of the package.
license:
The license of the package
author:
Author of the package
email:
An email address to use in the Maintainer field
biocViews:
Character data for the biocViews field of the DESCRIPTION file

Methods

chipName
signature(object = "AffySTPDInfoPkgSeed"): ...
getGeometry
signature(object = "AffySTPDInfoPkgSeed"): ...
makePdInfoPackage
signature(object = "AffySTPDInfoPkgSeed"): ...

Author(s)

B. Carvalho

Examples

showClass("AffySTPDInfoPkgSeed")

[Package pdInfoBuilder version 1.8.1 Index]