NgsExpressionPDInfoPkgSeed-class {pdInfoBuilder}R Documentation

Class "NgsExpressionPDInfoPkgSeed"

Description

PDInfo package Seed for NimbleGen Expression arrays

Objects from the Class

Objects can be created by calls of the form new("NgsExpressionPDInfoPkgSeed", ndfFile, pairFile, xysFile, ngdFile ...).

Slots

ndfFile:
NDF (NimbleGen Design) file
xysFile:
XYS File - used as template
chipName:
Name of the chip or platform
manufacturer:
chip/platform manufacturer
url:
chip URL
genomebuild:
The genome build this platform is based upon.
organism:
organism for chip.
species:
species for chip.
version:
A character vector giving the version number of the package.
license:
The license of the package
author:
Author of the package
email:
An email address to use in the Maintainer field
biocViews:
Character data for the biocViews field of the DESCRIPTION file

Methods

makePdInfoPackage
signature(.Object = "NgsExpressionPDInfoPkgSeed"): ...
chipName
signature(object = "NimbleGenPDInfoPkgSeed"): ...
getGeometry
signature(.Object = "NimbleGenPDInfoPkgSeed"): ...

Examples

showClass("NgsExpressionPDInfoPkgSeed")

[Package pdInfoBuilder version 1.8.1 Index]