NgsTilingPDInfoPkgSeed-class {pdInfoBuilder} | R Documentation |
Class "NgsTilingPDInfoPkgSeed"
Description
PDInfo package Seed for NimbleGen Tiling arrays
Objects from the Class
Objects can be created by calls of the form new("NgsTilingPDInfoPkgSeed", ndfFile, xysFile, pairFile, posFile ...)
.
Slots
ndfFile
:- NDF (NimbleGen Design) file
xysFile
:- XYS File - used as template
posFile
:- POS (Positions) file
chipName
:- Name of the chip or platform
manufacturer
:- chip/platform manufacturer
url
:- chip URL
genomebuild
:- The genome build this platform is based
upon.
organism
:- organism for chip.
species
:- species for chip.
version
:- A character vector giving the version
number of the package.
license
:- The license of the package
author
:- Author of the package
email
:- An email address to use in the Maintainer field
biocViews
:- Character data for the biocViews field of
the DESCRIPTION file
Methods
- makePdInfoPackage
signature(.Object = "NgsTilingPDInfoPkgSeed")
: ...
- chipName
signature(object = "NimbleGenPDInfoPkgSeed")
: ...
- getGeometry
signature(object = "NimbleGenPDInfoPkgSeed")
: ...
Examples
showClass("NgsTilingPDInfoPkgSeed")
[Package
pdInfoBuilder version 1.8.1
Index]