AffySNPCNVPDInfoPkgSeed2-class {pdInfoBuilder} | R Documentation |
A generic annotation package builder for Affymetrix SNP/CNV
arrays. This is a simplified version of the annotation package and
crlmm
will *NOT* work for them.
Objects can be created by calls of the form new("AffySNPCNVPDInfoPkgSeed2", csvAnnoFileCnv, csvSeqFileCnv, ...)
.
cdfFile
:csvAnnoFile
:csvSeqFile
:csvAnnoFileCnv
:csvSeqFileCnv
:chipName
:manufacturer
:url
:genomebuild
:organism
:species
:version
:license
:author
:email
:biocViews
:signature(object = "AffySNPCNVPDInfoPkgSeed2")
: ... signature(object = "AffySNPCNVPDInfoPkgSeed2")
: ... This is a simplified annotation package. CRLMM won't work for these objects.
The user may need to rename the columns or even add column names to the annotation and sequence files. In case problems are found, column names are suggested.
Benilton Carvalho
showClass("AffySNPCNVPDInfoPkgSeed2")