UCSCView-class {rtracklayer}R Documentation

Class "UCSCView"

Description

An object representing a view of a genome in the UCSC browser.

Objects from the Class

Objects are created by calling browserView(session, ...) where session is a UCSCSession.

Slots

hgsid:
Object of class "numeric", which identifies this view to UCSC.
session:
Object of class "BrowserSession" to which this view belongs.

Extends

Class "BrowserView", directly.

Methods

activeView(object)
Obtains a logical indicating whether this view is the active view.
range(object)
Obtains the RangesList displayed by this view.
range(object) <- value
Sets the RangesList displayed by this view.
trackNames(object)
Gets the names of the visible tracks in this view.
trackNames(object) <- value
Sets the visible tracks by name.
visible(object)
Get a named logical vector indicating whether each track is visible.
visible(object) <- value
Set a logical vector indicating the visibility of each track, in the same order as returned by visible(object).
ucscTrackModes(object)
Obtains the UCSCTrackModes for this view.
ucscTrackModes(object) <- value
Sets the UCSCTrackModes for this view. The value may be either a UCSCTrackModes instance or a character vector that will be coerced by a call to ucscTrackModes.

Author(s)

Michael Lawrence

See Also

browserView for creating instances of this class.


[Package rtracklayer version 1.4.1 Index]