browseGenome {rtracklayer} | R Documentation |
A generic function for launching a genome browser.
browseGenome(object, ...) ## S4 method for signature 'RangedDataORRangedDataList': browseGenome(object = RangedDataList(), browser = "ucsc", range = range(tracks), view = TRUE, trackParams = list(), viewParams = list(), ...)
object |
A list of RangedData instances,
e.g. a RangedDataList instance. |
browser |
The name of the genome browser. |
range |
The RangesList to display in
the initial view. |
view |
Whether to open a view. |
trackParams |
Named list of parameters to pass to
track<- . |
viewParams |
Named list of parameters to pass to
browserView . |
... |
Arguments corresponding to slots in
RangesList that override those in range . |
Returns a BrowserSession
.
Michael Lawrence
BrowserSession
and
BrowserView
, the two main classes for interfacing
with genome browsers.
## Not run: ## open UCSC genome browser: browseGenome() ## to view a specific range: range <- GenomicRanges("hg18", "chr22", 20000, 50000) browseGenome(range = range) ## a slightly larger range: browseGenome(range = range, end = 75000) ## with a track: track <- import(system.file("tests", "v1.gff", package = "rtracklayer")) browseGenome(RangedDataList(track)) ## End(Not run)