BasicTrackLine-class |
Class "BasicTrackLine" |
blocks |
Get blocks/exons |
blocks,RangedData-method |
Get blocks/exons |
blocks-methods |
Get blocks/exons |
browseGenome |
Browse a genome |
browseGenome,missing-method |
Browse a genome |
browseGenome,RangedDataORRangedDataList-method |
Browse a genome |
browserSession |
Get a genome browser session |
browserSession,BrowserView-method |
Get a genome browser session |
browserSession,character-method |
Get a genome browser session |
browserSession,missing-method |
Get a genome browser session |
browserSession,UCSCTableQuery-method |
Querying UCSC Tables |
BrowserSession-class |
Class "BrowserSession" |
browserSession-methods |
Get a genome browser session |
browserSession<- |
Querying UCSC Tables |
browserSession<-,UCSCTableQuery,UCSCSession-method |
Querying UCSC Tables |
browserView |
Getting browser views |
browserView,UCSCSession-method |
Getting browser views |
BrowserView-class |
Class "BrowserView" |
browserView-methods |
Getting browser views |
browserViews |
Getting the browser views |
browserViews,UCSCSession-method |
Getting the browser views |
browserViews-methods |
Getting the browser views |
export |
Export objects to connections |
export,ANY,ANY,character-method |
Export objects to connections |
export,ANY,character,character-method |
Export objects to connections |
export,ANY,character,missing-method |
Export objects to connections |
export,ANY,missing,character-method |
Export objects to connections |
export.bed |
Export tracks |
export.bed,RangedData-method |
Export tracks |
export.bed,UCSCData-method |
Class "UCSCData" |
export.gff |
Export tracks |
export.gff,RangedData-method |
Export tracks |
export.gff,UCSCData-method |
Class "UCSCData" |
export.gff1 |
Export tracks |
export.gff1,ANY-method |
Export tracks |
export.gff2 |
Export tracks |
export.gff2,ANY-method |
Export tracks |
export.gff3 |
Export tracks |
export.gff3,ANY-method |
Export tracks |
export.ucsc |
Export tracks |
export.ucsc,RangedData-method |
Export tracks |
export.ucsc,RangedDataList-method |
Export tracks |
export.ucsc,UCSCData-method |
Class "UCSCData" |
export.wig |
Export tracks |
export.wig,ANY-method |
Export tracks |
tableName |
Querying UCSC Tables |
tableName,UCSCTableQuery-method |
Querying UCSC Tables |
tableName<- |
Querying UCSC Tables |
tableName<-,UCSCTableQuery-method |
Querying UCSC Tables |
tableNames |
Querying UCSC Tables |
tableNames,UCSCTableQuery-method |
Querying UCSC Tables |
targets |
microRNA target sites |
track |
Querying UCSC Tables |
track,UCSCSession-method |
Class "UCSCSession" |
track,UCSCTableQuery-method |
Querying UCSC Tables |
track<- |
Laying tracks |
track<-,BrowserSession,RangedData-method |
Laying tracks |
track<-,BrowserSession,RangedDataList-method |
Laying tracks |
track<-,UCSCSession,RangedDataList-method |
Laying tracks |
track<--methods |
Laying tracks |
TrackLine-class |
Class "TrackLine" |
trackName |
Querying UCSC Tables |
trackName,UCSCTableQuery-method |
Querying UCSC Tables |
trackName<- |
Querying UCSC Tables |
trackName<-,UCSCTableQuery-method |
Querying UCSC Tables |
trackNames |
Accessing track names |
trackNames,UCSCSession-method |
Accessing track names |
trackNames,UCSCTrackModes-method |
Accessing track names |
trackNames,UCSCView-method |
Accessing track names |
trackNames-methods |
Accessing track names |
trackNames<- |
Accessing track names |
trackNames<-,UCSCTrackModes-method |
Accessing track names |
trackNames<-,UCSCView-method |
Accessing track names |
trackNames<--methods |
Accessing track names |
UCSCData-class |
Class "UCSCData" |
UCSCSession-class |
Class "UCSCSession" |
ucscTableQuery |
Querying UCSC Tables |
ucscTableQuery,UCSCSession-method |
Querying UCSC Tables |
UCSCTableQuery-class |
Querying UCSC Tables |
ucscTrackModes |
Accessing UCSC track modes |
ucscTrackModes,character-method |
Accessing UCSC track modes |
ucscTrackModes,missing-method |
Accessing UCSC track modes |
ucscTrackModes,UCSCSession-method |
Accessing UCSC track modes |
ucscTrackModes,ucscTracks-method |
Accessing UCSC track modes |
ucscTrackModes,UCSCView-method |
Accessing UCSC track modes |
UCSCTrackModes-class |
Class "UCSCTrackModes" |
ucscTrackModes-methods |
Accessing UCSC track modes |
ucscTrackModes<- |
Accessing UCSC track modes |
ucscTrackModes<-,UCSCView,character-method |
Accessing UCSC track modes |
ucscTrackModes<-,UCSCView,UCSCTrackModes-method |
Accessing UCSC track modes |
ucscTrackModes<--methods |
Accessing UCSC track modes |
UCSCView-class |
Class "UCSCView" |