yaqc.summary {yaqcaffy} | R Documentation |
Generates a data frame of QC outliers.
yaqc.summary(YAQCStatsObject,latex)
YAQCStatsObject |
an object of class "YAQCStats" . |
latex |
logical value. If 'TRUE', the data frame is returned as a latex table. |
The outliers of the YAQCStatsObject
quality control metrics are
summerized and returned as a data frame. The internal probe
(bioB, bioC and bioD) and poly-A controls
(dap, thr, phe and lys) are
summerized in two rows.
If latex
is set to 'TRUE', the data frame is returned as
a latex table (requires the xtable
library).
Note: not tested if the YAQCStatsObject has been generated with an Expression Set objects.
Laurent Gatto
## load data library(affydata) data(Dilution) ## create the yaqc object ## and plot it qobj <- yaqc(Dilution) summary(qobj)