yaqc.summary {yaqcaffy}R Documentation

Summarizes YAQCStats object outliers

Description

Generates a data frame of QC outliers.

Usage

yaqc.summary(YAQCStatsObject,latex)

Arguments

YAQCStatsObject an object of class "YAQCStats".
latex logical value. If 'TRUE', the data frame is returned as a latex table.

Details

The outliers of the YAQCStatsObject quality control metrics are summerized and returned as a data frame. The internal probe (bioB, bioC and bioD) and poly-A controls (dap, thr, phe and lys) are summerized in two rows.

If latex is set to 'TRUE', the data frame is returned as a latex table (requires the xtable library).

Note: not tested if the YAQCStatsObject has been generated with an Expression Set objects.

Author(s)

Laurent Gatto

Examples

  ## load data
  library(affydata)
  data(Dilution)
  ## create the yaqc object
  ## and plot it
  qobj <- yaqc(Dilution)
  summary(qobj)

[Package yaqcaffy version 1.4.0 Index]