acc |
Methods for Accessibility Lists |
acc,clusterGraph,character-method |
Methods for Accessibility Lists |
acc,clusterGraph-method |
Methods for Accessibility Lists |
acc,graph,character-method |
Methods for Accessibility Lists |
acc,graph-method |
Methods for Accessibility Lists |
acc-methods |
Methods for Accessibility Lists |
addEdge |
addEdge |
addEdge,character,character,graphNEL,numeric-method |
Class "graphNEL" |
addNode |
addNode |
addNode,character,distGraph,list-method |
addNode |
addNode,character,graphNEL,list-method |
addNode |
addNode,character,graphNEL,missing-method |
addNode |
addNode,character,graphNEL-method |
Class "graphNEL" |
adj |
Methods for finding the adjacency list for selected nodes. |
adj,clusterGraph-method |
Class "clusterGraph" |
adj,distGraph-method |
Class "distGraph" |
adj,graphNEL-method |
Class "graphNEL" |
adj-methods |
Methods for finding the adjacency list for selected nodes. |
aM2bpG |
Coercions between matrix and graph representations |
apopAttrs |
KEGG apoptosis pathway graph |
apopGraph |
KEGG apoptosis pathway graph |
apopLocusLink |
KEGG apoptosis pathway graph |
asGraphProperty |
Generic for converting input to graph property list |
asGraphProperty,list,logical-method |
Generic for converting input to graph property list |
asGraphProperty,list,missing-method |
Generic for converting input to graph property list |
asGraphProperty,numeric,logical-method |
Generic for converting input to graph property list |
asGraphProperty,numeric,missing-method |
Generic for converting input to graph property list |
asGraphProperty-methods |
Generic for converting input to graph property list |
aveNumEdges |
Calculate the average number of edges in a graph |
calcProb |
Calculate the hypergeometric probability of the subgraph's number of edges. |
calcSumProb |
Calculate the probability that a subgraph has an unusual number of edges. |
clearNode |
clearNode |
clearNode,character,graphNEL-method |
Class "graphNEL" |
clusterGraph-class |
Class "clusterGraph" |
clusteringCoefficient |
Clustering coefficient of a graph |
clusteringCoefficient,graph,ANY-method |
Clustering coefficient of a graph |
clusteringCoefficient,graph-method |
Clustering coefficient of a graph |
coerce |
Class "graphNEL" |
coerce,generalGraph-method |
Class "generalGraph" ~~~ |
coerce,graphNEL,generalGraph-method |
Class "graphNEL" |
coerce,graphNEL,matrix-method |
Coercions between matrix and graph representations |
coerce,matrix,graphNEL-method |
Coercions between matrix and graph representations |
combineNodes |
combineNodes |
combineNodes,character,graphNEL,character-method |
Class "graphNEL" |
complement |
Class "graph" |
complement,graph-method |
Class "graph" |
connComp |
Class "graph" |
connComp,clusterGraph-method |
Class "clusterGraph" |
connComp,graph-method |
Class "graph" |
connection-class |
Methods for GXL manipulations in package graph |
contents |
Class "hashtable" |
contents,hashtable,ANY-method |
Class "hashtable" |
contents,hashtable-method |
Class "hashtable" |
edgeID |
Class "gEdge" |
edgeID,gEdge-method |
Class "gEdge" |
edgeL |
Class "graphNEL" |
edgeL,graphNEL-method |
Class "graphNEL" |
edgeMatrix |
Compute an Edge Matrix or weight vector for a Graph |
edgeMatrix,clusterGraph-method |
Compute an Edge Matrix or weight vector for a Graph |
edgeMatrix,distGraph-method |
Compute an Edge Matrix or weight vector for a Graph |
edgeMatrix,graphNEL-method |
Compute an Edge Matrix or weight vector for a Graph |
edgemode |
Class "graph" |
edgemode,graph-method |
Class "graph" |
edgemode<-,graph,character-method |
Class "graph" |
edgeNames |
Class "graph" |
edgeNames,graph-method |
Class "graph" |
edgeOrder |
Class "gNode" |
edgeOrder,gNode-method |
Class "gNode" |
edges |
Class "graphNEL" |
edges,clusterGraph,character-method |
Class "clusterGraph" |
edges,clusterGraph,missing-method |
Class "clusterGraph" |
edges,distGraph,character-method |
Class "distGraph" |
edges,distGraph,missing-method |
Class "distGraph" |
edges,graphH,character-method |
Class "graphH" |
edges,graphH,missing-method |
Class "graphH" |
edges,graphNEL,character-method |
Class "graphNEL" |
edges,graphNEL,missing-method |
Class "graphNEL" |
edgeWeights |
Retrieve the edge weights for specified indices. |
edgeWeights,clusterGraph-method |
Class "clusterGraph" |
edgeWeights,distGraph-method |
Class "distGraph" |
edgeWeights,graphNEL-method |
Class "graphNEL" |
eNode |
Class "gEdge" |
eNode,gEdge-method |
Class "gEdge" |
eWV |
Compute an Edge Matrix or weight vector for a Graph |
idstring |
Class "graphH" |
idstring,gEdge-method |
Class "gEdge" |
idstring,gNode-method |
Class "gNode" |
idstring,graphH-method |
Class "graphH" |
IMCA |
KEGG Integrin Mediated Cell Adhesion graph |
IMCAAttrs |
KEGG Integrin Mediated Cell Adhesion graph |
IMCAGraph |
KEGG Integrin Mediated Cell Adhesion graph |
inEdges |
inEdges |
inEdges,character,graphNEL-method |
Class "graphNEL" |
inEdges,graphNEL,missing-method |
inEdges |
inEdges,missing,graphNEL-method |
Class "graphNEL" |
initialize |
Class "graphNEL" |
initialize,distGraph-method |
Class "distGraph" |
initialize,gEdge-method |
Class "gEdge" |
initialize,generalGraph-method |
Class "generalGraph" ~~~ |
initialize,gNode-method |
Class "gNode" |
initialize,graphH-method |
Class "graphH" |
initialize,graphNEL-method |
Class "graphNEL" |
initialize,hashtable-method |
Class "hashtable" |
int2ftM |
Standard labeling of edges with integers |
integrinMediatedCellAdhesion |
KEGG Integrin Mediated Cell Adhesion graph |
intersection |
Class "graph" |
intersection,graph,graph-method |
Class "graph" |
intersection2 |
Class "graph" |
intersection2,graph,graph-method |
Class "graph" |
intersection3 |
Class "graph" |
intersection3,graph,graph-method |
Class "graph" |
isConnected |
Class "graph" |
isConnected,graph-method |
Class "graph" |
threshold |
Class "distGraph" |
threshold,distGraph-method |
Class "distGraph" |
toDotR |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,character,list,list-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,character,missing,list-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,character,missing,missing-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,missing,character,missing-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,missing,list,list-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,missing,list,missing-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,missing,missing,list-method |
Methods for Function toDotR, using R to generate a dot serialization |
toDotR,graphNEL,missing,missing,missing-method |
Methods for Function toDotR, using R to generate a dot serialization |
toEdges |
Class "gNode" |
toEdges,gNode-method |
Class "gNode" |
toEdges<-,gNode-method |
Class "gNode" |
toGXL |
Methods for GXL manipulations in package graph |
toGXL,graphNEL-method |
Class "graphNEL" |
toGXL-methods |
Methods for GXL manipulations in package graph |