Chemical Structural Similarity Analysis
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Documentation for package ‘MetChem’ version 0.4
Help Pages
| allbranches | Cut a Tree into Groups of Data |
| chemical.dissimilarity | Chemical dissimilarity. |
| ChemRICH | ChemRICH Dataset |
| clusters.detection | Detection of clusters. |
| diseasesMet | Metabolite-associated Diseases |
| enzymesMet | Metabolite-associated Enzymes |
| features | Cluster features extraction |
| HFD | HFD Dataset |
| KODAMA.chem.sim | KODAMA chemical similarity. |
| Metabolites | Metabolomic Dataset |
| nameMet | Name of metabolites |
| pathwaysMet | Metabolic Pathways |
| propertiesMet | Physical Proprieties of metabolites |
| readMet | Metabolite Cards Reading |
| selectionMet | Metabolites selection |
| substituentsMet | Metabolite substituents |
| taxonomyMet | Metabolite Taxonomy |
| tree.cutting | Optimal cluster number calculation. |
| WMCSA | Weighted Metabolite Chemical Structural Analysis |
| write.cls | Write a CLS file |
| write.gct | Write a GCT file |
| write.gmt | Write a GMT file |