Last updated on 2024-05-04 09:50:03 CEST.
Package | ERROR | NOTE | OK |
---|---|---|---|
dartR | 1 | 11 | 1 |
dartR.base | 4 | 9 | |
dartR.captive | 13 | ||
dartR.data | 12 | ||
dartR.popgen | 2 | 11 | |
dartR.spatial | 13 | ||
dartRverse | 2 | 11 | |
PopGenReport | 12 |
Current CRAN status: ERROR: 1, NOTE: 11, OK: 1
Version: 2.9.7
Check: Rd files
Result: NOTE
checkRd: (-1) gl.filter.maf.Rd:7: Lost braces; missing escapes or markup?
7 | {adegenet} object}
| ^
checkRd: (-1) gl.pcoa.Rd:68: Lost braces; missing escapes or markup?
68 | The function is essentially a wrapper for glPca {adegenet} or pcoa \{ape\}
| ^
checkRd: (-1) gl.play.history.Rd:17: Lost braces
17 | code{x2@other$history[c(1,4,5)]}). [optional].}
| ^
checkRd: (-1) utils.jackknife.Rd:49: Lost braces
49 | bold{Note} that when n is very small, jackknife resampling is not recommended.
| ^
checkRd: (-1) utils.jackknife.Rd:51: Lost braces
51 | Parallel computation is implemented. The argument code{n.cores} indicates the
| ^
Flavors: r-devel-linux-x86_64-debian-clang, r-devel-linux-x86_64-debian-gcc, r-devel-linux-x86_64-fedora-clang, r-devel-linux-x86_64-fedora-gcc, r-devel-windows-x86_64, r-patched-linux-x86_64, r-release-linux-x86_64, r-release-macos-arm64, r-release-windows-x86_64
Version: 2.9.7
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 2.9.7
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 2.9.7
Check: examples
Result: ERROR
Running examples in 'dartR-Ex.R' failed
The error most likely occurred in:
> ### Name: gl.pcoa.plot
> ### Title: Bivariate or trivariate plot of the results of an ordination
> ### generated using gl.pcoa()
> ### Aliases: gl.pcoa.plot
>
> ### ** Examples
>
> test <- gl.pcoa(platypus.gl)
Starting gl.pcoa
Processing genlight object with SNP data
Warning: data include loci that are scored NA across all individuals.
Consider filtering using gl <- gl.filter.allna(gl)
Performing a PCA, individuals as entities, loci as attributes, SNP genotype as state
Flavor: r-oldrel-windows-x86_64
Current CRAN status: NOTE: 4, OK: 9
Version: 0.65
Check: installed package size
Result: NOTE
installed size is 5.1Mb
sub-directories of 1Mb or more:
R 2.0Mb
help 2.2Mb
Flavors: r-release-macos-arm64, r-release-macos-x86_64, r-oldrel-macos-arm64, r-oldrel-macos-x86_64
Version: 0.65
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 0.65
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: OK: 12
Current CRAN status: NOTE: 2, OK: 11
Version: 0.32
Check: package dependencies
Result: NOTE
Package suggested but not available for checking: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Version: 0.32
Check: Rd cross-references
Result: NOTE
Package unavailable to check Rd xrefs: ‘snpStats’
Flavors: r-release-macos-x86_64, r-oldrel-macos-arm64
Current CRAN status: OK: 13
Current CRAN status: NOTE: 2, OK: 11
Version: 0.51
Check: whether startup messages can be suppressed
Result: NOTE
Error: package or namespace load failed for ‘dartRverse’:
.onAttach failed in attachNamespace() for 'dartRverse', details:
call: utils::packageVersion(pkg)
error: there is no package called ‘dartR.popgen’
Execution halted
It looks like this package (or a package it requires) has a startup
message which cannot be suppressed: see ?packageStartupMessage.
Flavor: r-release-macos-arm64
Version: 0.51
Check: package dependencies
Result: NOTE
Packages suggested but not available for checking:
'dartR.sim', 'dartR.spatial'
Flavor: r-release-macos-x86_64
Current CRAN status: OK: 12