#  HiRISE Calibration Matricies configuration file
#  See documentation for the hical application on the content and form of
#  this file.
# $Id: hicalbeta.XXXX.conf,v 1.6 2008/04/02 17:24:39 kbecker Exp $
Object = Hical

  Program = "hicalbeta"

  Name           = "HiMatrices"
  DefaultProfile = "HiMatrices"

/* If you want to rerun hical, you must set PropagateTables to True.  Use */
/* this in conjuction with Debug::SkipPhase = True option for each module. */
  PropagateTables = False

/* Define label groups that are loaded for each profile reference */
/* Note all keywords in these groups become available to all profiles. */
/* Thus, you can use them in the OptionKeywords and ProfileOptions keywords */
/* to create very specialized profiles for special needs. */
/* Specify the FPA reference temperature.  It is used in several modules so */
/* it is specified at the top level */

  LabelGroups = ( "Dimensions", "Instrument", "Archive")

/* These keywords are used in ProfileOptions mapping.  Note that order and */
/* case matter!  WARNING:  You can easily break file lookups if these keys */
/* are deleted or modified improperly!!! */
  OptionKeywords = ("FILTER", "CCD", "CHANNEL", "TDI", "BIN", "ProductId",
                    "Program", "Module", "OPATH")

/* Additional profile combinations and order load hierarchy.  These keywords */
/* are defined when the LabelGroups are loaded. */
  ProfileOptions = ("{FILTER}", "TDI{TDI}", "BIN{BIN}", "TDI{TDI}/BIN{BIN}",
                    "{FILTER}{CCD}_{CHANNEL}",
                    "{FILTER}{CCD}_{CHANNEL}/TDI{TDI}/BIN{BIN}", "Debug")

/* Specify the FPA reference temperature.  It is used in several modules so */
/* it is specified at the top level */
  FpaReferenceTemperature = 21.0

/* This profile contains parameters pertinent to processing the buffer */
/* pixels for subsequent using in the drift correction, Zd module */
  Group = Profile
    Name = Zf
    Module = Zf
    ZfFirstSample = 5
    ZfLastSample = 11
    ZfFilterWidth = 11
    ZfFilterIterations = 1
  End_Group

/* This profile contains parameters pertinent to processing drift correction */
  Group = Profile
    Name = Zd
    Module = Zd

  /* Uncomment to turn off non linear fitting of Zf data and pass it thru */
  /*  ZdSkipFit = True  */

  /* Minimum number of good lines (NLines - (TrimLines/Summing)) to fit */
    ZdMinimumLines = 250

  /* Maximum  number of iterations for the algorithm to converge and */
  /* other limits */
    MaximumIterations = 100
    MaximumLog        = 709.0

  /*  Convergence parameters for Levenberg-Marquardt algorithm */
  /*  Equation is solved when |dx_i| < AbsoluteError + RelativeError * |x_i| */
  /*    where dx is the last step and x is the current step for each i-th */
  /*    value */
    AbsoluteError = 1.0E-4
    RelativeError = 1.0E-4

  /* Filtering of the guestimate buffer */
    GuessFilterWidth = 17
    GuessFilterIterations = 1

#    DumpModuleFile = "{ProductId}_{Module}.log"
  End_Group

/* This profile contains parameters pertinent to processing the offset */
  Group = Profile
    Name = Zz
    Module = Zz

/* Set calibration parameters for hiclean operations.  Indexes are all 0-based */
    ZzFirstLine = 1
    ZzLastLine  = 19
  End_Group

/* This profile contains parameters pertinent to processing dark current. */
/* Required label keywords:  Summing, Tdi, FpaPositiveYTemperature, */
/*                           and FpaNegativeYTemperature, Lines */
/* Also needs LineTime which is computed. */
  Group = Profile
    Name = Zb
    Module = Zb

/* Define the B matrix file reference */
    B = "$mro/calibration/matrices/beta/B_TDI{TDI}_BIN{BIN}_hicalbeta_????.cub"
    SkipLines        = 1
    Slope            = "$mro/calibration/matrices/beta/t_slope_CH{CHANNEL}_hicalbeta_????.csv"
    Intercept        = "$mro/calibration/matrices/beta/t_intercept_CH{CHANNEL}_hicalbeta_????.csv"

    /* Do filtering? */
    ZbFilterWidth      = 3
    ZbFilterIterations = 1
  End_Group

/* This profile contains parameters pertinent to processing gain correction. */
/* Required label keywords: CpmmNumber, ChannelNumber, Lines */
  Group = Profile
    Name = Zg
    Module = Zg

    SkipLines            = 1
    GainLineCoefficients = "$mro/calibration/matrices/beta/line_correct_{BIN}_????.csv"
  End_Group

/* This profile contains parameters pertinent to processing gain correction. */
/* Required label keywords: CpmmNumber, ChannelNumber, Lines */
  Group = Profile
    Name = Zgg
    Module = Zgg

/* Define the G matrix file reference */
    G = "$mro/calibration/matrices/beta/G_TDI{TDI}_BIN{BIN}_hicalbeta_????.cub"
  End_Group

/* This profile contains parameters pertinent to processing gain correction. */
/* Required label keywords: CpmmNumber, ChannelNumber, Lines */
  Group = Profile
    Name = Za
    Module = Za

/ Applies a temperature correction factor to A matrix */
    ZaFpaTemperatureFactor = 0.005

/* Define the A matrix file reference */
     A = "$mro/calibration/matrices/beta/A_TDI{TDI}_BIN{BIN}_hicalbeta_????.cub"
  End_Group

/* This profile contains parameters pertinent to processing I/F conversion. */
/*  Required label keywords: ScanExposureDuration */
  Group = Profile
    Name = Ziof
    Module = Ziof

/* I/F correction for tdi/bin - currently set at 1.0 for all tdi/bin */h
/* combinations. */
    ZiofBinFactor = 1.0
  End_Group

/* Here are the filter profiles.  All keywords that pertain to a filter set */
/* should be specified here.  FilterGainCorrection are I/F corrections in */
/* units of DN/s. */
  Group = Profile
    Name = RED
    FilterGainCorrection = 175613029.0
  End_Group

  Group = Profile
    Name = IR
    FilterGainCorrection  =  58571990.0
  End_Group

  Group = Profile
    Name = BG
    FilterGainCorrection  =  93575312.0
  End_Group

  Group = Profile
    Name = IR10_1
#   LastGoodLine = 3100
  End_Group

  Group = Profile
    Name = Debug

/** Current disables writting to label history due to bug in keyword formatter in ISIS **/
/* The bug has the following error signature: */
/*        terminate called after throwing an instance of 'std::out_of_range'  */
/*          what():  basic_string::substr                                     */
/*         Abort                                                              */
/* You must set this to false when this occurs as a workaround and use the */
/* DumpHistoryFile parameter to see the parameter history. */
    LogParameterHistory = False

/* Uncomment this line to write parameter history to the ProductId log */
   DumpHistoryFile = "{OPATH}/{ProductId}.{Program}.log"

/* Uncomment this line to dump Module data for every module when using Debug */
/* profiling. */
#    DumpModuleFile = "{ProductId}_{Module}.log"
  End_Group

End_Object