ISIS 3 Application Documentation
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This program will normalize a cube based on line averages.
Description
Categories
Groups
Examples
History
Description
This is useful for linescan camera images where the signal drifts over time. It can also be used for correcting for photometric changes when part of the image was taken during the day and the other part was taken at night.
The boxcar size should be somewhere between 0% and 200%, where 200% will give you the same image back and 0% will remove all albedo and clean up all noise. The reason for the boxcar size being 200% is because the boxcar folds at the border, meaning at line zero it's only incorporating 50% of the lines and at the center it's incorporating all of them. The 200% boxcar makes every pixel incorporates a boxcar of all of the data, causing only negligable change in the equation.
The normalization is achieved by collecting all of the line averages for any given band. A lowpass filter is then run on these averages. Finally, the lines are normalized with their smoothed average. The CSV output option will output a CSV file (readable by most spreadsheet programs such as Excel) with the line averages before and after smoothing. Using this data, graphing the line averages will reveal and identify problem data.
Categories
Parameter Groups
Files
| Name | Description |
|---|---|
| FROM | Cube to normalize |
| TO | Normalized cube |
| CSV | CSV formatted file of line averages output |
Settings
| Name | Description |
|---|---|
| BOXTYPE | Boxcar height specified in pixels of percentage |
| BOXSIZE | Boxcar size for smoothing |
| AVERAGES | Output a CSV formatted file of the line averages |
Files: FROM
Description
Specify the cube to be normalized.
| Type | cube |
|---|---|
| File Mode | input |
Files: TO
Description
Specify the output (normalized) cube.
| Type | cube |
|---|---|
| File Mode | output |
Files: CSV
Description
Specify the CSV file to output the line averages to.
| Type | filename |
|---|---|
| File Mode | output |
| Internal Default | No Output |
| Filter | *.csv |
Settings: BOXTYPE
Description
When overriding the default boxcar size, you can enter the new value as a percentage of the image height or as an absolute size.
| Type | string | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Default | NONE | ||||||||||||
| Option List: |
|
Settings: BOXSIZE
Description
This will override the default boxcar size when smoothing the line averages. The larger this size is, the less the image is affected. The smaller the boxcar, the larger the effect. If entering an absolute line size, it must be odd (any even number will automatically be rounded up).
| Type | integer |
|---|
Settings: AVERAGES
Description
Output a CSV formatted file of the line averages and the smoothed averages.
| Type | boolean |
|---|---|
| Default | false |
| Inclusions |
|
Examples
Example 1
Normalizing a cube
Description
Command Line
GUI Screenshot
Running this program
|
Running this program on input.cub
Parameter Name:
TO This screen shot shows how to run this program using a small boxcar on input.cub. |
Input Images
Noise
|
Noise
Parameter Name:
FROM This shows the noise that was introduced into the input image. It's values change line by line. This was introduced to input.cub by using fx and adding to the valid data. |
Original
|
Original Data
Parameter Name:
FROM This is the original image, before anything was done to it. |
Before
|
Input Data
Parameter Name:
FROM This is the original image with the noise added in. |
Output Image
After
|
Output Image
Parameter Name:
TO This shows the image after this program was run. Notice the image data is restored, but all albedo was lost. |
Example 2
Identifying a problem cube
Description
Command Line
GUI Screenshot
Running this program
|
Running this program on I07762023RDR_CN.cub with CSV output
Parameter Name:
TO This screen shot shows how to run this program on I07762023RDR_CN.cub and output the line averages as CSV. |
Input Images
Overall Graph
|
CSV Graph
Parameter Name:
CSV This shows the graph of the averages from the CSV file. Notice there is a large spike on the far left hand side of the data. This should be investigated further. |
Zoomed In Graph
|
CSV Graph (a closer look)
Parameter Name:
CSV This shows the graph of the averages from the CSV file zoomed into the left side. Notice the smoothed average (pink) is significantly off from the averages (blue). This tells us that the data in this region did not normalize properly. |
Input
|
The cube
Parameter Name:
FROM This shows the first 1000 lines of the image before this program was run. Notice the bright area in this data corrosponds to the spike on the CSV graph. |
Output Image
Output
|
Output Image
Parameter Name:
TO This shows the first 1000 lines of the image after this program was run. Notice the resulting effects of this incorrect normalization. A smaller boxcar would balance this area, except for the lines with the bad data, but would also destroy any valid albedo. |
Example 3
Deciding on a boxcar size
Description
Command Line
GUI Screenshot
Running this program at 5% boxcar
|
Running this program on input.cub with a 5% boxcar size
Parameter Name:
BOXSIZE This screen shot shows how to run this program using a 5% boxcar on input.cub. |
Running this program at 20% boxcar
|
Running this program on input.cub with a 20% boxcar size
Parameter Name:
BOXSIZE This screen shot shows how to run this program using a 20% boxcar on input.cub. |
Running this program at 50% boxcar
|
Running this program on input.cub with a 50% boxcar size
Parameter Name:
BOXSIZE This screen shot shows how to run this program using a 50% boxcar on input.cub. |
Input Image
Noise
|
Input Data
Parameter Name:
FROM This is the original image. Notice it's very bright at the top and very dark at the bottom. |
Output Images
Very Small Boxcar
|
Output Image
Parameter Name:
TO This shows the image after this program was run with a very small boxcar. Notice the loss of albedo. |
Small Boxcar
|
Output Image
Parameter Name:
TO This shows the image after this program was run with a small boxcar. Notice less of the data was properly normalized and there's more albedo. |
Larger Boxcar
|
Output Image
Parameter Name:
TO This shows the image after this program was run with a larger boxcar. The albedo change from the last example to this one is minimal, but much more data was lost. |
History
| Steven Lambright | 2007-07-26 | Original version |
| Steven Lambright | 2007-08-06 | Added options and expanded examples |
| Steven Lambright | 2007-12-10 | Fixed bug where batchlists failed after a few runs |
| Steven Lambright | 2007-12-11 | Fixed problem with gaps in the images causing the program to fail |
| Steven Lambright | 2008-05-13 | Removed references to CubeInfo |
| Debbie A. Cook | 2011-11-18 | Made the output pixel match the input pixel when the input was a special pixel |