pfamSMART2AC {PFAM} | R Documentation

## Mappings from SMART ID to Accession number

### Description

Mapping function from SMART ID (SMART) to the associated Accession number (AC)

### Usage

    pfamSMART2AC(smart=NULL)

### Arguments

`smart` | A character vector of SMART ID or NULL (default)

### Details

If `smart` is a vector of SMART ID, pfamSMART2AC will return a list of associated Accession number for the given `smart`. If `smart` is NULL, pfamSMART2AC(smart=NULL) (or pfamSMART2AC()) will return a list of associated Accession number for all the SMART ID in the database. Extra information: None More Details: SMART (a Simple Modular Architecture Research Tool, http://smart.embl-heidelberg.de/) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. Reference: (1) Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864. (2) Letunic et al. (2004) Nucleic Acids Res 32, D142-D144

### Value

A list of Accession number.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        SMART2AC <- pfamSMART2AC()
        head(SMART2AC)
        pfamSMART2AC(smart=sample(names(SMART2AC), 3))
    ## End(Not run)

[Package PFAM version 1.12.0 Index]