pfamAC2PDB {PFAM} | R Documentation

## Mappings from Accession number to PDB ID

### Description

Mapping function from Accession number (AC) to the associated PDB ID (PDB)

### Usage

    pfamAC2PDB(ac=NULL)

### Arguments

`ac` | A character vector of Accession number or NULL (default)

### Details

If `ac` is a vector of Accession number, pfamAC2PDB will return a list of associated PDB ID for the given `ac`. If `ac` is NULL, pfamAC2PDB(ac=NULL) (or pfamAC2PDB()) will return a list of associated PDB ID for all the Accession number in the database. Extra information: Start and end points More Details: PDB (http://www.rcsb.org/pdb/index.html), the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Reference: H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank. Nucleic Acids Research , 28 pp. 235-242 (2000)

### Value

A list of PDB ID.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        AC2PDB <- pfamAC2PDB()
        head(AC2PDB)
        pfamAC2PDB(ac=sample(names(AC2PDB), 3))
    ## End(Not run)

[Package PFAM version 1.12.0 Index]