pfamAC2CAZY {PFAM} | R Documentation

## Mappings from Accession number to CAZY ID

### Description

Mapping function from Accession number (AC) to the associated CAZY ID (CAZY)

### Usage

    pfamAC2CAZY(ac=NULL)

### Arguments

`ac` | A character vector of Accession number or NULL (default)

### Details

If `ac` is a vector of Accession number, pfamAC2CAZY will return a list of associated CAZY ID for the given `ac`. If `ac` is NULL, pfamAC2CAZY(ac=NULL) (or pfamAC2CAZY()) will return a list of associated CAZY ID for all the Accession number in the database. Extra information: None More Details: The CAZy database (http://afmb.cnrs-mrs.fr/CAZY/) describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

### Value

A list of CAZY ID.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        AC2CAZY <- pfamAC2CAZY()
        head(AC2CAZY)
        pfamAC2CAZY(ac=sample(names(AC2CAZY), 3))
    ## End(Not run)

[Package PFAM version 1.12.0 Index]