pfamPROSITEPROFILE2AC {PFAM} | R Documentation

## Mappings from PROSITE_PROFILE ID to Accession number

### Description

Mapping function from PROSITE_PROFILE ID (PROSITEPROFILE) to the associated Accession number (AC)

### Usage

    pfamPROSITEPROFILE2AC(prositeprofile=NULL)

### Arguments

`prositeprofile` | A character vector of PROSITE_PROFILE ID or NULL (default)

### Details

If `prositeprofile` is a vector of PROSITE_PROFILE ID, pfamPROSITEPROFILE2AC will return a list of associated Accession number for the given `prositeprofile`. If `prositeprofile` is NULL, pfamPROSITEPROFILE2AC(prositeprofile=NULL) (or pfamPROSITEPROFILE2AC()) will return a list of associated Accession number for all the PROSITE_PROFILE ID in the database. Extra information: None More Details: None

### Value

A list of Accession number.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        PROSITEPROFILE2AC <- pfamPROSITEPROFILE2AC()
        head(PROSITEPROFILE2AC)
        pfamPROSITEPROFILE2AC(prositeprofile=sample(names(PROSITEPROFILE2AC), 3))
    ## End(Not run)

[Package PFAM version 1.12.0 Index]