\HeaderA{ratLLMappingsLL2GO}{An annotation data file that maps LocusLink identifiers to Gene
Ontology identifiers}{ratLLMappingsLL2GO}
\keyword{datasets}{ratLLMappingsLL2GO}
\begin{Description}\relax
ratLLMappingsLL2GO maps LocusLink ids to Gene Ontology (GO) ids
representing functions of the products of genes correspinding to the
LocusLink ids
\end{Description}
\begin{Details}\relax
This is an environment object containing key and value pairs. Keys are
LocusLink ids and values are GO ids. Values are vectors of length 1 or
more depending on whether a LocusLink id can be mapped to one or more
Gene Ontology ids. Names of values are evidence code.

The evidence codes in use include:

IMP: inferred from mutant phenotype  
IGI: inferred from genetic interaction
IPI: inferred from physical interaction  
ISS: inferred from sequence similarity 
IDA: inferred from direct assay  
IEP: inferred from expression pattern  
IEA: inferred from electronic annotation  
TAS: traceable author statement  
NAS: non-traceable author statement  
ND: no biological data avai

Mappings were derived from data provided by:

Entrez Gene: Not available

Package built: Sat Mar 25 23:16:08 2006
\end{Details}
\begin{References}\relax
\url{ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL_tmpl.gz}
\end{References}
\begin{Examples}
\begin{ExampleCode}
        require("annotate") || stop("annotate unavailable")
        xx <- as.list(ratLLMappingsLL2GO)
        if(length(xx) > 0){
                # Get the value of the first key
                xx[[1]]
                # Get the values  for a few keys
                if(length(xx) >= 3){
                        xx[1:3]
                }
        }
\end{ExampleCode}
\end{Examples}

