\HeaderA{DEDS-internal}{Internal DEDS functions}{DEDS.Rdash.internal}
\aliasA{deds.calcAdjP}{DEDS-internal}{deds.calcAdjP}
\aliasA{deds.calcFDR}{DEDS-internal}{deds.calcFDR}
\aliasA{deds.checkB}{DEDS-internal}{deds.checkB}
\aliasA{deds.checkclasslabel}{DEDS-internal}{deds.checkclasslabel}
\aliasA{deds.checkothers}{DEDS-internal}{deds.checkothers}
\aliasA{deds.checkX}{DEDS-internal}{deds.checkX}
\aliasA{deds.next.sample}{DEDS-internal}{deds.next.sample}
\aliasA{euclidean}{DEDS-internal}{euclidean}
\aliasA{sam.fdr}{DEDS-internal}{sam.fdr}
\aliasA{sam.multiclass.func}{DEDS-internal}{sam.multiclass.func}
\aliasA{sam.oneclass.func}{DEDS-internal}{sam.oneclass.func}
\aliasA{sam.s0}{DEDS-internal}{sam.s0}
\aliasA{sam.twoclass.func}{DEDS-internal}{sam.twoclass.func}
\aliasA{test.checkX}{DEDS-internal}{test.checkX}
\aliasA{type2test}{DEDS-internal}{type2test}
\keyword{internal}{DEDS-internal}
\begin{Description}\relax
Internal DEDS functions
\end{Description}
\begin{Usage}
\begin{verbatim}
deds.checkB(classlabel, B, verbose = TRUE)
deds.checkothers(tail = "abs", distance = "weuclid", adj = "fdr")
deds.checkclasslabel(classlabel, tests)
deds.checkX(X, classlabel, tests, nsig = nrow(X), B)
test.checkX(X, classlabel, test)
deds.calcFDR(bD, D, R, K = length(D))
deds.calcAdjP(bD, D, R, K = length(D))
deds.next.sample(L)
type2test(tail = c("abs", "higher", "lower"), distance = c("weuclid",
"euclid"), adj = c("fdr", "adjp"), L)
sam.fdr(order.t, ordertB, deltas)
sam.multiclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
sam.twoclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
sam.oneclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
sam.s0(r, s, s.step = 0.01, alpha.step = 0.01, plot.it = FALSE)
euclidean(X, center, wval)
\end{verbatim}
\end{Usage}
\begin{Details}\relax
These are not to be called directly by the user.
\end{Details}

