DEDS-internal              package:DEDS              R Documentation

_I_n_t_e_r_n_a_l _D_E_D_S _f_u_n_c_t_i_o_n_s

_D_e_s_c_r_i_p_t_i_o_n:

     Internal DEDS functions

_U_s_a_g_e:

     deds.checkB(classlabel, B, verbose = TRUE)
     deds.checkothers(tail = "abs", distance = "weuclid", adj = "fdr")
     deds.checkclasslabel(classlabel, tests)
     deds.checkX(X, classlabel, tests, nsig = nrow(X), B)
     test.checkX(X, classlabel, test)
     deds.calcFDR(bD, D, R, K = length(D))
     deds.calcAdjP(bD, D, R, K = length(D))
     deds.next.sample(L)
     type2test(tail = c("abs", "higher", "lower"), distance = c("weuclid",
     "euclid"), adj = c("fdr", "adjp"), L)
     sam.fdr(order.t, ordertB, deltas)
     sam.multiclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
     verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
     sam.twoclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
     verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
     sam.oneclass.func(X, L, prob = 0.5, B = 200, stat.only = TRUE,
     verbose = FALSE, s.step=0.01, alpha.step=0.01, plot.it=FALSE)
     sam.s0(r, s, s.step = 0.01, alpha.step = 0.01, plot.it = FALSE)
     euclidean(X, center, wval)

_D_e_t_a_i_l_s:

     These are not to be called directly by the user.

