runPicard              package:snapCGH              R Documentation

_R_e_s_u_l_t_s _o_f _s_e_g_m_e_n_t_i_n_g _a_n _M_A_L_i_s_t _d_a_t_a _o_b_j_e_c_t _u_s_i_n_g _t_h_e _P_i_c_a_r_d _e_t
_a_l _a_l_g_o_r_i_t_h_m _f_o_u_n_d _i_n _t_h_e _t_i_l_i_n_g_A_r_r_a_y _l_i_b_r_a_r_y

_D_e_s_c_r_i_p_t_i_o_n:

     Wrapper calling the Picard et al segmentation algorithm on an
     MAList object.  This function requires the library 'DNAcopy' to be
     loaded.

_U_s_a_g_e:

       runPicard(input, maxSeg, maxk = 200, criteria = "BIC")

_A_r_g_u_m_e_n_t_s:

   input: An object of class 'MAList' or 'SegList'

  maxSeg: integer of length 1, maximum number of segments (= 1 +
          maximum number of change points)

    maxk: integer of length 1, maximum length of a single segment

criteria: Criteria for model selection.  Options are "none", "AIC" and
          "BIC" (default)

_V_a_l_u_e:

     The function returns an object of class 'SegList'

_A_u_t_h_o_r(_s):

     Mike Smith

_S_e_e _A_l_s_o:

     'segment' 'MAList' 'runHomHMM' 'runGLAD' 'SegList'

