\HeaderA{runPicard}{Results of segmenting an MAList data object using the Picard et
al algorithm found in the tilingArray library}{runPicard}
\keyword{methods}{runPicard}
\begin{Description}\relax
Wrapper calling the Picard et al segmentation algorithm on an MAList
object.  This function requires the library \code{DNAcopy} to be loaded.
\end{Description}
\begin{Usage}
\begin{verbatim}
  runPicard(input, maxSeg, maxk = 200, criteria = "BIC")
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{input}] An object of class \code{\LinkA{MAList}{MAList}} or \code{\LinkA{SegList}{SegList}}
\item[\code{maxSeg}] integer of length 1, maximum number of segments (= 1 +
maximum number of change points)
\item[\code{maxk}] integer of length 1, maximum length of a single segment
\item[\code{criteria}] Criteria for model selection.  Options are "none",
"AIC" and "BIC" (default)
\end{ldescription}
\end{Arguments}
\begin{Value}
The function returns an object of class \code{\LinkA{SegList}{SegList}}
\end{Value}
\begin{Author}\relax
Mike Smith
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{segment}{segment}}
\code{\LinkA{MAList}{MAList}}
\code{\LinkA{runHomHMM}{runHomHMM}}
\code{\LinkA{runGLAD}{runGLAD}}
\code{\LinkA{SegList}{SegList}}
\end{SeeAlso}

