zoomGenome              package:snapCGH              R Documentation

_I_n_t_e_r_a_c_t_i_v_e _p_l_o_t _o_f _t_h_e _w_h_o_l_e _g_e_n_o_m_e

_D_e_s_c_r_i_p_t_i_o_n:

     Plot splitting the screen into two.  The top windows displays the
     entire genome, whilst the bottom plots a single chromosome.  The
     plot is interactive allowing the user to click on a chromosome in
     the upper plot and have it displayed below.  Clicking to either
     side of the plot borders ends the interactivity.

_U_s_a_g_e:

     zoomGenome(..., array = 1, colors = NULL, chrominfo = chrominfo.Mb)

_A_r_g_u_m_e_n_t_s:

     ...: Objects of type 'SegList'

   array: Specify which array should be plotted.

  colors: Vector specify the colors for each of the SegLists

chrominfo: chromosomal information associated with the mapping of the
          data.

_D_e_t_a_i_l_s:

     If colors is unspecified then all objects passed to this function
     will be plotted in blue.  Since this makes it quite hard to tell
     which is which it is highly recommened to specify the colors
     vector if more than one object is being passe to this function.

_A_u_t_h_o_r(_s):

     Mike Smith

