find.param.five           package:snapCGH           R Documentation

_Y_i_e_l_d_s _t_h_e _o_u_t_p_u_t _i_n _a _m_o_d_e_l _w_i_t_h _f_i_v_e _u_n_d_e_r_l_y_i_n_g _s_t_a_t_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function is a workhorse of the process.data function. It
     outputs state means/variances and transitions matrices in the
     model with five states.

_U_s_a_g_e:

     find.param.five(output.optim,var.fixed)

_A_r_g_u_m_e_n_t_s:

output.optim: output of the optimisation with 5 underlying states

var.fixed: Logical variable - TRUE if you want to fix the variance to
          be the same across states

_V_a_l_u_e:

     Outputs the mean/variance, transition matrix, maximised likelihood
     and convergence information

_A_u_t_h_o_r(_s):

     John Marioni

