find.param.four           package:snapCGH           R Documentation

_Y_i_e_l_d_s _o_u_t_p_u_t _w_h_e_n _t_h_e_r_e _a_r_e _4 _u_n_d_e_r_l_y_i_n_g _s_t_a_t_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     This function provides the output (means/variances, transition
     matrix, likelihood) when the heterogeneous HMM is fitted with four
     underlying states.  It is a workhorse of the process.data
     function.

_U_s_a_g_e:

     find.param.four(output.optim,var.fixed)

_A_r_g_u_m_e_n_t_s:

output.optim: The output from fitting a heterogeneous HMM when there
          are four underlying states 

var.fixed: Logical variable - TRUE if you want the variance to be tied
          across states. Defaults to FALSE 

_V_a_l_u_e:

     This function outputs the state means/variances, transition
     matrices, rate parameters, maximised likelihood and convergence
     information provided by fitting a heterogeneous HMM with four
     underlying states.

_A_u_t_h_o_r(_s):

     John Marioni

