\HeaderA{IDProbes}{Interactive version of genomePlot}{IDProbes}
\keyword{hplot}{IDProbes}
\begin{Description}\relax
Interactive version of \code{\LinkA{genomePlot}{genomePlot}}.  Allows the user to
click near a probe and the name of that probe will be displayed next
to it.
\end{Description}
\begin{Usage}
\begin{verbatim}
IDProbes(input, array = 1, naut = 22, Y = FALSE, X
                 = FALSE, status, values, pch, cex, col, chrominfo =
                 chrominfo.Mb, ylim = c(-2, 2), ylb = "Log2Ratio",
                 chrom.to.plot = 1, xlim = c(0,NA))
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{input}] an object of class \code{\LinkA{MAList}{MAList}} or \code{\LinkA{SegList}{SegList}}
\item[\code{array}] integer of the array (sample) to be plotted.
\item[\code{naut}] number of autosomes in the organism
\item[\code{Y}] TRUE if chromosome Y is to be plotted, FALSE otherwise
\item[\code{X}] TRUE if chromosome X is to be plotted, FALSE otherwise
\item[\code{status}] character vector giving the control status of each spot on the array, of same length as the number of rows of \code{log2ratios(input)}. If omitted, all points are plotted in the default color, symbol and size.
\item[\code{values}] character vector giving values of \code{status} to be highlighted on the plot. Defaults to unique values of \code{status}. Ignored if there is no \code{status} vector.
\item[\code{pch}] vector or list of plotting characters. Default to integer code 16. Ignored is there is no \code{status} vector.
\item[\code{col}] numeric or character vector of colors, of the same length as \code{values}. Defaults to \code{1:length(values)}. Ignored if there is no \code{status} vector.
\item[\code{cex}] numeric vector of plot symbol expansions, of the the same
length as \code{values}. Defaults to 0.2 for the most common
\code{status} value and 1 for the others. Ignored if there is no
\code{status} vector.
\item[\code{chrominfo}] a chromosomal information associated with the mapping of the data.
\item[\code{ylim}] Minimum y-scale to use for plotting.
\item[\code{chrom.to.plot}] Specify which chromosome to plot
\item[\code{ylb}] label for the Y-axis.
\item[\code{xlim}] limits for the x-axis
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Mike Smith
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{genomePlot}{genomePlot}}
\end{SeeAlso}

