\HeaderA{filterClones}{Filter clones from sample}{filterClones}
\keyword{methods}{filterClones}
\begin{Description}\relax
Function for filtering clones via a user defined function.
\end{Description}
\begin{Usage}
\begin{verbatim}
        filterClones(MA, filterFunc, ...)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{MA}] An object of class \code{\LinkA{MAList}{MAList}}
\item[\code{filterFunc}] A user specified function that accepts an MAList 
and returns the indices of the clones to be removed.
\item[\code{...}] Additional arguments to be passed to the filter function.
\end{ldescription}
\end{Arguments}
\begin{Details}\relax
Any clones identified by the filter function are turned into NA's.
These are then removed or imputed within the \code{\LinkA{processCGH}{processCGH}} function.
\end{Details}
\begin{Author}\relax
Mike Smith
\end{Author}

