\HeaderA{removeByWeights}{Remove clones based on a weights matrix}{removeByWeights}
\keyword{methods}{removeByWeights}
\begin{Description}\relax
An example function to be used by the filterClones method.
This function takes an MA list, a weights matrix and a threshold 
and returns the indices of any clones with weight below the 
threshold.
\end{Description}
\begin{Usage}
\begin{verbatim}
        removeByWeights(MA, weights=MA$weights, threshold = 0.2)
\end{verbatim}
\end{Usage}
\begin{Arguments}
\begin{ldescription}
\item[\code{MA}] An object of class \code{\LinkA{MAList}{MAList}}
\item[\code{weights}] A matrix with the same dimensions as MA containing
weight information.
\item[\code{threshold}] Threshold value.  Any clones with weight below this 
are removed.
\end{ldescription}
\end{Arguments}
\begin{Author}\relax
Mike Smith
\end{Author}
\begin{SeeAlso}\relax
\code{\LinkA{filterClones}{filterClones}}
\end{SeeAlso}

