\HeaderA{plotTIC-methods}{Plot total ion count}{plotTIC.Rdash.methods}
\aliasA{plotTIC}{plotTIC-methods}{plotTIC}
\aliasA{plotTIC,xcmsRaw-method}{plotTIC-methods}{plotTIC,xcmsRaw.Rdash.method}
\keyword{methods}{plotTIC-methods}
\keyword{hplot}{plotTIC-methods}
\keyword{iplot}{plotTIC-methods}
\begin{Description}\relax
Plot chromatogram of total ion count. Optionally allow identification
of target peaks and viewing/identification of individual spectra.
\end{Description}
\begin{Arguments}
\begin{ldescription}
\item[\code{object}] the \code{xcmsRaw} object
\item[\code{ident}] logical, use mouse to identify and label chromatographic peaks

\item[\code{ident}] logical, use mouse to identify and label spectral peaks

\end{ldescription}
\end{Arguments}
\begin{Value}
If \code{ident == TRUE}, an integer vector with the indecies of
the points that were identified. Otherwise a two-column matrix
with the plotted points.
\end{Value}
\begin{Section}{Methods}
\describe{
\item[object = "xcmsRaw"] \code{plotTIC(object, ident = FALSE, msident = FALSE)}

}
\end{Section}
\begin{SeeAlso}\relax
\code{\LinkA{xcmsRaw-class}{xcmsRaw.Rdash.class}}
\end{SeeAlso}

