pfamAC2PROSITE {PFAM} | R Documentation

## Mappings from Accession number to PROSITE ID

### Description

Mapping function from Accession number (AC) to the associated PROSITE ID (PROSITE)

### Usage

    pfamAC2PROSITE(ac=NULL)

### Arguments

`ac` | A character vector of Accession number or NULL (default)

### Details

If `ac` is a vector of Accession number, pfamAC2PROSITE will return a list of associated PROSITE ID for the given `ac`. If `ac` is NULL, pfamAC2PROSITE(ac=NULL) (or pfamAC2PROSITE()) will return a list of associated PROSITE ID for all the Accession number in the database. Extra information: None More Details: PROSITE (http://www.expasy.ch/prosite/) is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs. Reference: Hulo N., Sigrist C.J.A., Le Saux V., Langendijk-Genevaux P.S., Bordoli L., Gattiker A., De Castro E., Bucher P., Bairoch A. Recent improvements to the PROSITE database. Nucl. Acids. Res. 32:D134-D137(2004)

### Value

A list of PROSITE ID.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        AC2PROSITE <- pfamAC2PROSITE()
        head(AC2PROSITE)
        pfamAC2PROSITE(ac=sample(names(AC2PROSITE), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]