pfamAC2MIM {PFAM} | R Documentation

## Mappings from Accession number to MIM ID

### Description

Mapping function from Accession number (AC) to the associated MIM ID (MIM)

### Usage

    pfamAC2MIM(ac=NULL)

### Arguments

`ac` | A character vector of Accession number or NULL (default)

### Details

If `ac` is a vector of Accession number, pfamAC2MIM will return a list of associated MIM ID for the given `ac`. If `ac` is NULL, pfamAC2MIM(ac=NULL) (or pfamAC2MIM()) will return a list of associated MIM ID for all the Accession number in the database. Extra information: None More Details: MIM (a.k.a. OMIM, http://www.ncbi.nlm.nih.gov/omim/) is a catalog of human genes and genetic disorders authored and edited by Dr. Victor A. McKusick and his colleagues at Johns Hopkins and elsewhere. Reference: <MIM> MIM: McKusick, V.A.: Mendelian Inheritance in Man. A Catalog of Human Genes and Genetic Disorders. Baltimore: Johns Hopkins University Press, 1998 (12th edition). <OMIM> Online Mendelian Inheritance in Man, OMIM (TM). McKusick-Nathans Institute for Genetic Medicine, Johns Hopkins University (Baltimore, MD) and National Center for Biotechnology Information, National Library of Medicine (Bethesda, MD), 2000

### Value

A list of MIM ID.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        AC2MIM <- pfamAC2MIM()
        head(AC2MIM)
        pfamAC2MIM(ac=sample(names(AC2MIM), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]