pfamCAZY2AC {PFAM} | R Documentation

## Mappings from CAZY ID to Accession number

### Description

Mapping function from CAZY ID (CAZY) to the associated Accession number (AC)

### Usage

    pfamCAZY2AC(cazy=NULL)

### Arguments

`cazy` | A character vector of CAZY ID or NULL (default)

### Details

If `cazy` is a vector of CAZY ID, pfamCAZY2AC will return a list of associated Accession number for the given `cazy`. If `cazy` is NULL, pfamCAZY2AC(cazy=NULL) (or pfamCAZY2AC()) will return a list of associated Accession number for all the CAZY ID in the database. Extra information: None More Details: The CAZy database (http://afmb.cnrs-mrs.fr/CAZY/) describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

### Value

A list of Accession number.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        CAZY2AC <- pfamCAZY2AC()
        head(CAZY2AC)
        pfamCAZY2AC(cazy=sample(names(CAZY2AC), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]