pfamAC2SMART {PFAM} | R Documentation

## Mappings from Accession number to SMART ID

### Description

Mapping function from Accession number (AC) to the associated SMART ID (SMART)

### Usage

    pfamAC2SMART(ac=NULL)

### Arguments

`ac` | A character vector of Accession number or NULL (default)

### Details

If `ac` is a vector of Accession number, pfamAC2SMART will return a list of associated SMART ID for the given `ac`. If `ac` is NULL, pfamAC2SMART(ac=NULL) (or pfamAC2SMART()) will return a list of associated SMART ID for all the Accession number in the database. Extra information: None More Details: SMART (a Simple Modular Architecture Research Tool, http://smart.embl-heidelberg.de/) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. Reference: (1) Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864. (2) Letunic et al. (2004) Nucleic Acids Res 32, D142-D144

### Value

A list of SMART ID.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        AC2SMART <- pfamAC2SMART()
        head(AC2SMART)
        pfamAC2SMART(ac=sample(names(AC2SMART), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]