pfamAC2SCOP {PFAM} | R Documentation

## Mappings from Accession number to SCOP ID

### Description

Mapping function from Accession number (AC) to the associated SCOP ID (SCOP)

### Usage

    pfamAC2SCOP(ac=NULL)

### Arguments

`ac` | A character vector of Accession number or NULL (default)

### Details

If `ac` is a vector of Accession number, pfamAC2SCOP will return a list of associated SCOP ID for the given `ac`. If `ac` is NULL, pfamAC2SCOP(ac=NULL) (or pfamAC2SCOP()) will return a list of associated SCOP ID for all the Accession number in the database. Extra information: Placement More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540

### Value

A list of SCOP ID.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        AC2SCOP <- pfamAC2SCOP()
        head(AC2SCOP)
        pfamAC2SCOP(ac=sample(names(AC2SCOP), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]