pfamSCOP2AC {PFAM} | R Documentation

## Mappings from SCOP ID to Accession number

### Description

Mapping function from SCOP ID (SCOP) to the associated Accession number (AC)

### Usage

    pfamSCOP2AC(scop=NULL)

### Arguments

`scop` | A character vector of SCOP ID or NULL (default)

### Details

If `scop` is a vector of SCOP ID, pfamSCOP2AC will return a list of associated Accession number for the given `scop`. If `scop` is NULL, pfamSCOP2AC(scop=NULL) (or pfamSCOP2AC()) will return a list of associated Accession number for all the SCOP ID in the database. Extra information: None More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540

### Value

A list of Accession number.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        SCOP2AC <- pfamSCOP2AC()
        head(SCOP2AC)
        pfamSCOP2AC(scop=sample(names(SCOP2AC), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]