pfamPDB2AC {PFAM} | R Documentation

## Mappings from PDB ID to Accession number

### Description

Mapping function from PDB ID (PDB) to the associated Accession number (AC)

### Usage

    pfamPDB2AC(pdb=NULL)

### Arguments

`pdb` | A character vector of PDB ID or NULL (default)

### Details

If `pdb` is a vector of PDB ID, pfamPDB2AC will return a list of associated Accession number for the given `pdb`. If `pdb` is NULL, pfamPDB2AC(pdb=NULL) (or pfamPDB2AC()) will return a list of associated Accession number for all the PDB ID in the database. Extra information: None More Details: PDB (http://www.rcsb.org/pdb/index.html), the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Reference: H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank. Nucleic Acids Research , 28 pp. 235-242 (2000)

### Value

A list of Accession number.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        PDB2AC <- pfamPDB2AC()
        head(PDB2AC)
        pfamPDB2AC(pdb=sample(names(PDB2AC), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]