pfamPROSITE2AC {PFAM} | R Documentation

## Mappings from PROSITE ID to Accession number

### Description

Mapping function from PROSITE ID (PROSITE) to the associated Accession number (AC)

### Usage

    pfamPROSITE2AC(prosite=NULL)

### Arguments

`prosite` | A character vector of PROSITE ID or NULL (default)

### Details

If `prosite` is a vector of PROSITE ID, pfamPROSITE2AC will return a list of associated Accession number for the given `prosite`. If `prosite` is NULL, pfamPROSITE2AC(prosite=NULL) (or pfamPROSITE2AC()) will return a list of associated Accession number for all the PROSITE ID in the database. Extra information: None More Details: PROSITE (http://www.expasy.ch/prosite/) is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs. Reference: Hulo N., Sigrist C.J.A., Le Saux V., Langendijk-Genevaux P.S., Bordoli L., Gattiker A., De Castro E., Bucher P., Bairoch A. Recent improvements to the PROSITE database. Nucl. Acids. Res. 32:D134-D137(2004)

### Value

A list of Accession number.

### Author(s)

Ting-Yuan Liu

### References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

### Examples

    ## Not run:
        PROSITE2AC <- pfamPROSITE2AC()
        head(PROSITE2AC)
        pfamPROSITE2AC(prosite=sample(names(PROSITE2AC), 3))
    ## End(Not run)

[Package PFAM version 1.14.1 Index]