m20kcodPROSITE {m20kcod} | R Documentation

## Map Manufacturer IDs to PROSITE ID

### Description

m20kcodPROSITE is an R environment that provides mappings between a manufacturer identifier and the associated PROSITE identifiers.

### Details

Each manufacturer identifier maps to a named vector of PROSITE identifiers. The name for each PROSITE identifier is the IPI accession numbe where this PROSITE identifier is found.

If the PROSITE is a named NA, it means that the associated Entrez Gene id of this manufacturer identifier is found in an IPI entry of the IPI database, but there is no PROSITE identifier in the entry.

If the PROSITE is a non-named NA, it means that the associated Entrez Gene id of this manufacturer identifier is not found in any IPI entry of the IPI database.

### References

Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney E., Apweiler R. The International Protein Index: An integrated database for proteomics experiments. Proteomics 4(7): 1985-1988 (2004) http://www.ebi.ac.uk/IPI/IPIhelp.html

### Examples

            # Convert to a list
            xxx <- as.list(m20kcodPROSITE)
            # randomly display 10 probes
            xxx[sample(1:length(xxx), 10)]

[Package m20kcod version 1.2.0 Index]