viablePrey {ppiData} | R Documentation

## Lists of viable prey or baits in each bait to prey dataset

### Description

These are named lists consisting of either the viable prey or the viable baits corresponding to each dataset.

The names should be listed by the systematic gene names. If the systematic gene names could not be found, then a common name is used. If the data was obtained from IntAct, and neither a common nor a systematic name could be found, the IntAct Accension Identification Code ("EBI-*****") is retained. The IntAct Codes will always be listed first if they exist.

Because we have chosen to supress the homodimer relationships within the respective bait to bait or viable prey directed graphs, there will be proteins listed as viable prey which index isolated nodes in the graphs. These isolated nodes simply mean that these proteins were only seen to interact within homodimer relationships.

### Usage

    data(viableBaits)
    data(viablePrey)

### Format

A named list. Each element is a character vector of the viable prey (or baits) for the corresponding dataset.

### Examples

    data(viablePrey)
    data(viableBaits)
    names(viablePrey)
    names(viableBaits)
    viableBaits[[1]][1:5]

[Package ppiData version 0.0.8 Index]