Affymetrix Arabidopsis Genome Array annotation data (chip ag)


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Documentation for package ‘ag.db’ version 2.0.2

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ag Bioconductor annotation data package
agACCNUM Map between manufacturer IDs and AGI locus IDs
agARACYC Mappings between probe identifiers and KEGG pathway identifiers
agARACYCENZYME Map between Manufacturer IDs and Enzyme Names from ARACYC
agCHR Map Manufacturer IDs to Chromosomes
agCHRLOC Map Manufacturer IDs to Chromosomal Location
agENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
agENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
agGENENAME Map between Manufacturer IDs and Genes
agGO Map between Manufacturer IDs and Gene Ontology (GO)
agGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
agGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
agMAPCOUNTS Number of mapped keys for the maps in package ag.db
agMULTIHIT Map between manufacturer IDs and AGI locus IDs
agORGANISM The Organism for ag
agPATH Mappings between probe identifiers and KEGG pathway identifiers
agPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
agPMID Map between Manufacturer Identifiers and PubMed Identifiers
agPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
agSYMBOL Map between Manufacturer Identifiers and Gene Symbols
ag_dbconn Collect information about the package annotation DB
ag_dbfile Collect information about the package annotation DB
ag_dbInfo Collect information about the package annotation DB
ag_dbschema Collect information about the package annotation DB