Affymetrix Human Genome Focus Array annotation data (chip hgfocus)


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Documentation for package ‘hgfocus.db’ version 2.0.2

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hgfocus Bioconductor annotation data package
hgfocusACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
hgfocusALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
hgfocusCHR Map Manufacturer IDs to Chromosomes
hgfocusCHRLENGTHS A named vector for the length of each of the chromosomes
hgfocusCHRLOC Map Manufacturer IDs to Chromosomal Location
hgfocusENTREZID Map between Manufacturer Identifiers and Entrez Gene
hgfocusENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
hgfocusENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
hgfocusGENENAME Map between Manufacturer IDs and Genes
hgfocusGO Map between Manufacturer IDs and Gene Ontology (GO)
hgfocusGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
hgfocusGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
hgfocusLOCUSID Map between Manufacturer Identifiers and Entrez Gene
hgfocusMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
hgfocusMAPCOUNTS Number of mapped keys for the maps in package hgfocus.db
hgfocusOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
hgfocusORGANISM The Organism for hgfocus
hgfocusPATH Mappings between probe identifiers and KEGG pathway identifiers
hgfocusPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
hgfocusPFAM Map Manufacturer IDs to Pfam IDs
hgfocusPMID Map between Manufacturer Identifiers and PubMed Identifiers
hgfocusPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
hgfocusPROSITE Map Manufacturer IDs to PROSITE ID
hgfocusREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
hgfocusSYMBOL Map between Manufacturer Identifiers and Gene Symbols
hgfocusUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
hgfocus_dbconn Collect information about the package annotation DB
hgfocus_dbfile Collect information about the package annotation DB
hgfocus_dbInfo Collect information about the package annotation DB
hgfocus_dbschema Collect information about the package annotation DB